public class MCMCRunSQL extends RepositoryStorageSQL implements MCMCRunStorage
connection, name_id
nickname, reposListeners, transferAgent
Constructor and Description |
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MCMCRunSQL(RepositoryConnectivity conn,
java.lang.String repos) |
addPreparedStatement, afterTransferStorage, commit, createStatement, executeAllBatchedStatements, getBatchCount, getBatchCounts, getComment, getConnection, getCreatedBy, getCreatedOn, getDefaultGraphicalEditorClass, getDetailsTable, getDetailsTableCommentColumn, getDetailsTableCreatedByColumn, getDetailsTableCreatedOnColumn, getDetailsTableEnabledColumn, getDetailsTableIDColumn, getDOMStorageClass, getDoublyNarrowerSingleEntry, getEnabled, getMaxBatchCount, getMultipleData, getNameByID, getNameID, getNameID, getNarrowerSingleEntry, getNickname, getPreparedStatement, getPreparedStatements, getSingleEntry, getStorage, isBatchSettingOn, putNameID, setAutoCommit, setBatchCount, setBatchSettingOff, setBatchSettingOn, setComment, setConnection, setCreatedBy, setCreatedOn, setDoublyNarrowerSingleEntry, setEnabled, setNarrowerSingleEntry, setNickname, setNoAfterTransferExecuteBatch, setSingleEntry, usePreparedInfo
addRepositoryListener, afterCopyStorage, beforeCopyStorage, beforeTransferStorage, copyStorage, copyStorageCommands, getStorageCalculationsAgentClass, getStorageTransferAgentClass, removeRepositoryListener, show, transferStorage, transferStorageCommands
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
addRepositoryListener, getComment, getCreatedBy, getCreatedOn, getDefaultGraphicalEditorClass, getEnabled, getNickname, removeRepositoryListener, setComment, setCreatedBy, setCreatedOn, setEnabled, setNickname
afterCopyStorage, afterTransferStorage, beforeCopyStorage, beforeTransferStorage, copyStorage, copyStorageCommands, transferStorage, transferStorageCommands
getDOMStorageClass
public MCMCRunSQL(RepositoryConnectivity conn, java.lang.String repos)
public java.lang.String hasDelegateState(java.lang.String state)
hasDelegateState
in interface MCMCRunStorage
public void addDelegateState(java.lang.String state)
addDelegateState
in interface MCMCRunStorage
public void removeDelegateState(java.lang.String state)
removeDelegateState
in interface MCMCRunStorage
public java.util.Vector getDelegateStates()
getDelegateStates
in interface MCMCRunStorage
public void setMCMCRunState(java.lang.String s)
setMCMCRunState
in interface MCMCRunStorage
public java.lang.String getMCMCRunState()
getMCMCRunState
in interface MCMCRunStorage
public void advanceMCMCRunState()
advanceMCMCRunState
in interface MCMCRunStorage
public void initialize()
initialize
in interface MCMCRunStorage
public ParameterSetStorage getReferenceParameterStorage()
getReferenceParameterStorage
in interface MCMCRunStorage
public ParameterSetStorage getPreviousParameterStorage()
getPreviousParameterStorage
in interface MCMCRunStorage
public ParameterSetStorage getCandidateParameterStorage()
getCandidateParameterStorage
in interface MCMCRunStorage
public ParameterSetStorage getMixingParameterStorage()
getMixingParameterStorage
in interface MCMCRunStorage
public ProposalDistributionStorage getProposalDistributionStorage()
getProposalDistributionStorage
in interface MCMCRunStorage
public void setMCMCStorageConfigClass(java.lang.String sampler)
public java.lang.String getMCMCStorageConfigClass()
public void setMCMCStorageRepositoryName(java.lang.String sampler)
public java.lang.String getMCMCStorageRepositoryName()
public void setMCMCStorageNickname(java.lang.String sampler)
public java.lang.String getMCMCStorageNickname()
public void setMCMCRunIdentifier(java.lang.String sampler)
setMCMCRunIdentifier
in interface MCMCRunStorage
public java.lang.String getMCMCRunIdentifier()
getMCMCRunIdentifier
in interface MCMCRunStorage
public void setMCMCSampler(java.lang.String sampler)
public java.lang.String getMCMCSampler()
public java.lang.String getIsStillRunning()
getIsStillRunning
in interface MCMCRunStorage
public void setIsStillRunning(java.lang.String boole)
setIsStillRunning
in interface MCMCRunStorage
public java.lang.String getShouldHalt()
getShouldHalt
in interface MCMCRunStorage
public void setShouldHalt(java.lang.String boole)
setShouldHalt
in interface MCMCRunStorage
public java.lang.String getShouldRollBack()
MCMCRunStorage
getShouldRollBack
in interface MCMCRunStorage
public void setShouldRollBack(java.lang.String boole)
MCMCRunStorage
setShouldRollBack
in interface MCMCRunStorage
public java.lang.String getIsStateLocked()
getIsStateLocked
in interface MCMCRunStorage
public void setIsStateLocked(java.lang.String boole)
setIsStateLocked
in interface MCMCRunStorage
public java.lang.String getCurrentIterationNumber()
getCurrentIterationNumber
in interface MCMCRunStorage
public void setCurrentIterationNumber(java.lang.String v)
setCurrentIterationNumber
in interface MCMCRunStorage
public java.lang.String getCurrentLinkCount()
MCMCRunStorage
getCurrentLinkCount
in interface MCMCRunStorage
public void setCurrentLinkCount(java.lang.String v)
setCurrentLinkCount
in interface MCMCRunStorage
public java.lang.String getCurrentParameterBlockCycleNumber()
getCurrentParameterBlockCycleNumber
in interface MCMCRunStorage
public void setCurrentParameterBlockCycleNumber(java.lang.String x)
setCurrentParameterBlockCycleNumber
in interface MCMCRunStorage
public java.lang.String getObjectStorageRepositoryName()
public void setObjectStorageRepositoryName(java.lang.String x)
public java.lang.String getObjectStorageConfigClass()
public void setObjectStorageConfigClass(java.lang.String x)
public java.lang.String getParameterStorageConfigClass()
public void setParameterStorageConfigClass(java.lang.String x)
public java.lang.String getParameterStorageRepositoryName()
public void setParameterStorageRepositoryName(java.lang.String x)
public java.lang.String getMCMCTraceStorageConfigClass()
public void setMCMCTraceStorageConfigClass(java.lang.String x)
public java.lang.String getMCMCTraceStorageRepositoryName()
public void setMCMCTraceStorageRepositoryName(java.lang.String x)
public java.lang.String getMCMCTraceStorageNickname()
public void setMCMCTraceStorageNickname(java.lang.String x)
public java.lang.String getCurrentAlpha()
getCurrentAlpha
in interface MCMCRunStorage
public void setCurrentAlpha(java.lang.String prob)
setCurrentAlpha
in interface MCMCRunStorage
public java.lang.String getMaximumIterationNumber()
getMaximumIterationNumber
in interface MCMCRunStorage
public void setMaximumIterationNumber(java.lang.String v)
setMaximumIterationNumber
in interface MCMCRunStorage
public java.lang.String getRejectCount()
getRejectCount
in interface MCMCRunStorage
public void setRejectCount(java.lang.String v)
setRejectCount
in interface MCMCRunStorage
public java.lang.String getAcceptCount()
getAcceptCount
in interface MCMCRunStorage
public void setAcceptCount(java.lang.String v)
setAcceptCount
in interface MCMCRunStorage
public void setIsPriorFlat(java.lang.String bool)
setIsPriorFlat
in interface MCMCRunStorage
public java.lang.String getIsPriorFlat()
getIsPriorFlat
in interface MCMCRunStorage
public void setIsProposalSymmetric(java.lang.String bool)
setIsProposalSymmetric
in interface MCMCRunStorage
public java.lang.String getIsProposalSymmetric()
getIsProposalSymmetric
in interface MCMCRunStorage
public void holdParameterFixed(java.lang.String pname)
MCMCRunStorage
holdParameterFixed
in interface MCMCRunStorage
public java.lang.String getCurrentParameterBlockIndex()
getCurrentParameterBlockIndex
in interface MCMCRunStorage
public void setCurrentParameterBlockIndex(java.lang.String x)
setCurrentParameterBlockIndex
in interface MCMCRunStorage
public int getParameterBlockCount()
getParameterBlockCount
in interface MCMCRunStorage
public void addParameterBlock()
addParameterBlock
in interface MCMCRunStorage
public void insertParameterBlock(int j)
insertParameterBlock
in interface MCMCRunStorage
public void removeParameterBlock(int index)
removeParameterBlock
in interface MCMCRunStorage
public void setParameterBlockName(int index, java.lang.String name)
setParameterBlockName
in interface MCMCRunStorage
public java.lang.String getParameterBlockName(int index)
getParameterBlockName
in interface MCMCRunStorage
public java.lang.String getParameterBlockNumberOfCycles(int index)
getParameterBlockNumberOfCycles
in interface MCMCRunStorage
public void setParameterBlockNumberOfCycles(int index, java.lang.String num)
setParameterBlockNumberOfCycles
in interface MCMCRunStorage
public java.util.Vector getParameterBlockParameters(int index)
getParameterBlockParameters
in interface MCMCRunStorage
public void addParameterBlockParameter(int index, java.lang.String pname)
addParameterBlockParameter
in interface MCMCRunStorage
public void removeParameterBlockParameter(int index, java.lang.String pname)
removeParameterBlockParameter
in interface MCMCRunStorage
public void setMCMCSamplerRepositoryElement(RepositoryElement elem)
setMCMCSamplerRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getMCMCSamplerRepositoryElement()
getMCMCSamplerRepositoryElement
in interface MCMCRunStorage
public void setReferenceParameterRepositoryElement(RepositoryElement elem)
setReferenceParameterRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getReferenceParameterRepositoryElement()
getReferenceParameterRepositoryElement
in interface MCMCRunStorage
public void setPreviousParameterRepositoryElement(RepositoryElement elem)
setPreviousParameterRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getPreviousParameterRepositoryElement()
getPreviousParameterRepositoryElement
in interface MCMCRunStorage
public void setPreviousObjectRepositoryElement(RepositoryElement elem)
setPreviousObjectRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getPreviousObjectRepositoryElement()
getPreviousObjectRepositoryElement
in interface MCMCRunStorage
public void setReferenceParametersFrom(ParameterSetStorage P)
setReferenceParametersFrom
in interface MCMCRunStorage
public void setReferenceParametersFrom(DblParamSet P)
setReferenceParametersFrom
in interface MCMCRunStorage
public double getRejectFraction()
getRejectFraction
in interface MCMCRunStorage
public void stop()
stop
in interface MCMCRunStorage
public void start()
start
in interface MCMCRunStorage
public void restartUsingParametersFrom(ParameterSetStorage stor)
restartUsingParametersFrom
in interface MCMCRunStorage
public void restartUsingParametersFrom(DblParamSet params)
restartUsingParametersFrom
in interface MCMCRunStorage
public void setCandidateParameterRepositoryElement(RepositoryElement elem)
setCandidateParameterRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getCandidateParameterRepositoryElement()
getCandidateParameterRepositoryElement
in interface MCMCRunStorage
public void setCandidateObjectRepositoryElement(RepositoryElement elem)
setCandidateObjectRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getCandidateObjectRepositoryElement()
getCandidateObjectRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getAPROPRepositoryElement()
getAPROPRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getBPROPRepositoryElement()
getBPROPRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getAPRIORRepositoryElement()
getAPRIORRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getBPRIORRepositoryElement()
getBPRIORRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getALIKERepositoryElement()
getALIKERepositoryElement
in interface MCMCRunStorage
public RepositoryElement getBLIKERepositoryElement()
getBLIKERepositoryElement
in interface MCMCRunStorage
public void setAPROPRepositoryElement(RepositoryElement elem)
setAPROPRepositoryElement
in interface MCMCRunStorage
public void setBPROPRepositoryElement(RepositoryElement elem)
setBPROPRepositoryElement
in interface MCMCRunStorage
public void setAPRIORRepositoryElement(RepositoryElement elem)
setAPRIORRepositoryElement
in interface MCMCRunStorage
public void setBPRIORRepositoryElement(RepositoryElement elem)
setBPRIORRepositoryElement
in interface MCMCRunStorage
public void setALIKERepositoryElement(RepositoryElement elem)
setALIKERepositoryElement
in interface MCMCRunStorage
public void setBLIKERepositoryElement(RepositoryElement elem)
setBLIKERepositoryElement
in interface MCMCRunStorage
public RepositoryElement getProposalDistributionRepositoryElement()
getProposalDistributionRepositoryElement
in interface MCMCRunStorage
public void setProposalDistributionRepositoryElement(RepositoryElement elem)
setProposalDistributionRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getParentMCMCRepositoryElement()
getParentMCMCRepositoryElement
in interface MCMCRunStorage
public void setParentMCMCRepositoryElement(RepositoryElement elem)
setParentMCMCRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getParameterTraceRepositoryElement()
getParameterTraceRepositoryElement
in interface MCMCRunStorage
public void setParameterTraceRepositoryElement(RepositoryElement elem)
setParameterTraceRepositoryElement
in interface MCMCRunStorage
public RepositoryElement getObjectTraceRepositoryElement()
getObjectTraceRepositoryElement
in interface MCMCRunStorage
public void setObjectTraceRepositoryElement(RepositoryElement elem)
setObjectTraceRepositoryElement
in interface MCMCRunStorage
public java.lang.String getRecordParameterTrace()
getRecordParameterTrace
in interface MCMCRunStorage
public void setRecordParameterTrace(java.lang.String bool)
setRecordParameterTrace
in interface MCMCRunStorage
public java.lang.String getRecordObjectTrace()
getRecordObjectTrace
in interface MCMCRunStorage
public void setRecordObjectTrace(java.lang.String bool)
setRecordObjectTrace
in interface MCMCRunStorage
Copyright © 2011, 2013. Daniel P. Dougherty