public interface MCMCRunStorage extends RepositoryStorage
addRepositoryListener, getComment, getCreatedBy, getCreatedOn, getDefaultGraphicalEditorClass, getEnabled, getNickname, removeRepositoryListener, setComment, setCreatedBy, setCreatedOn, setEnabled, setNickname
afterCopyStorage, afterTransferStorage, beforeCopyStorage, beforeTransferStorage, copyStorage, copyStorageCommands, transferStorage, transferStorageCommands
getDOMStorageClass
void initialize()
ProposalDistributionStorage getProposalDistributionStorage()
ParameterSetStorage getPreviousParameterStorage()
ParameterSetStorage getCandidateParameterStorage()
ParameterSetStorage getReferenceParameterStorage()
ParameterSetStorage getMixingParameterStorage()
java.lang.String getShouldRollBack()
void setShouldRollBack(java.lang.String bool)
java.lang.String hasDelegateState(java.lang.String state)
void addDelegateState(java.lang.String state)
void removeDelegateState(java.lang.String state)
java.util.Vector getDelegateStates()
java.lang.String getMCMCRunState()
void setMCMCRunState(java.lang.String state)
void advanceMCMCRunState()
RepositoryElement getParentMCMCRepositoryElement()
void setParentMCMCRepositoryElement(RepositoryElement elem)
RepositoryElement getParameterTraceRepositoryElement()
void setParameterTraceRepositoryElement(RepositoryElement elem)
RepositoryElement getObjectTraceRepositoryElement()
void setObjectTraceRepositoryElement(RepositoryElement elem)
void setRecordParameterTrace(java.lang.String siz)
java.lang.String getRecordParameterTrace()
void setRecordObjectTrace(java.lang.String siz)
java.lang.String getRecordObjectTrace()
void setMCMCRunIdentifier(java.lang.String sampler)
java.lang.String getMCMCRunIdentifier()
java.lang.String getIsStateLocked()
void setIsStateLocked(java.lang.String boole)
java.lang.String getIsStillRunning()
void setIsStillRunning(java.lang.String boole)
java.lang.String getShouldHalt()
void setShouldHalt(java.lang.String boole)
void stop()
void start()
java.lang.String getCurrentIterationNumber()
void setCurrentIterationNumber(java.lang.String v)
java.lang.String getCurrentLinkCount()
void setCurrentLinkCount(java.lang.String v)
java.lang.String getCurrentAlpha()
void setCurrentAlpha(java.lang.String prob)
java.lang.String getMaximumIterationNumber()
void setMaximumIterationNumber(java.lang.String v)
java.lang.String getRejectCount()
void setRejectCount(java.lang.String v)
java.lang.String getAcceptCount()
void setAcceptCount(java.lang.String v)
double getRejectFraction()
int getParameterBlockCount()
java.lang.String getCurrentParameterBlockIndex()
void setCurrentParameterBlockIndex(java.lang.String x)
java.lang.String getCurrentParameterBlockCycleNumber()
void setCurrentParameterBlockCycleNumber(java.lang.String x)
void addParameterBlock()
void insertParameterBlock(int j)
void removeParameterBlock(int index)
void setParameterBlockName(int index, java.lang.String name)
java.lang.String getParameterBlockName(int index)
java.lang.String getParameterBlockNumberOfCycles(int index)
void setParameterBlockNumberOfCycles(int index, java.lang.String num)
java.util.Vector getParameterBlockParameters(int index)
void addParameterBlockParameter(int index, java.lang.String pname)
void removeParameterBlockParameter(int index, java.lang.String pname)
void holdParameterFixed(java.lang.String pname)
RepositoryElement getCandidateParameterRepositoryElement()
void setCandidateParameterRepositoryElement(RepositoryElement elem)
void restartUsingParametersFrom(ParameterSetStorage elem)
void restartUsingParametersFrom(DblParamSet params)
RepositoryElement getCandidateObjectRepositoryElement()
void setCandidateObjectRepositoryElement(RepositoryElement elem)
RepositoryElement getPreviousParameterRepositoryElement()
void setPreviousParameterRepositoryElement(RepositoryElement elem)
RepositoryElement getReferenceParameterRepositoryElement()
void setReferenceParameterRepositoryElement(RepositoryElement elem)
RepositoryElement getPreviousObjectRepositoryElement()
void setPreviousObjectRepositoryElement(RepositoryElement elem)
void setReferenceParametersFrom(DblParamSet P)
void setReferenceParametersFrom(ParameterSetStorage P)
RepositoryElement getMCMCSamplerRepositoryElement()
void setMCMCSamplerRepositoryElement(RepositoryElement elem)
RepositoryElement getProposalDistributionRepositoryElement()
void setProposalDistributionRepositoryElement(RepositoryElement elem)
void setIsPriorFlat(java.lang.String bool)
java.lang.String getIsPriorFlat()
void setIsProposalSymmetric(java.lang.String bool)
java.lang.String getIsProposalSymmetric()
void setALIKERepositoryElement(RepositoryElement el)
RepositoryElement getALIKERepositoryElement()
void setAPRIORRepositoryElement(RepositoryElement el)
RepositoryElement getAPRIORRepositoryElement()
void setAPROPRepositoryElement(RepositoryElement el)
RepositoryElement getAPROPRepositoryElement()
void setBLIKERepositoryElement(RepositoryElement el)
RepositoryElement getBLIKERepositoryElement()
void setBPRIORRepositoryElement(RepositoryElement el)
RepositoryElement getBPRIORRepositoryElement()
void setBPROPRepositoryElement(RepositoryElement el)
RepositoryElement getBPROPRepositoryElement()
Copyright © 2011, 2013. Daniel P. Dougherty