Package | Description |
---|---|
com.mockturtlesolutions.snifflib.mcmctools.database |
Base classes for the repository storage framework of the mcmctools package.
|
com.mockturtlesolutions.snifflib.mcmctools.workbench |
Graphical interface classes for the repository storage framework of the mcmctools package.
|
com.mockturtlesolutions.snifflib.statmodeltools.database |
Base classes for the repository storage framework of the statmodeltools package.
|
com.mockturtlesolutions.snifflib.statmodeltools.workbench |
Graphical interface classes for the repository storage framework of the statmodeltools package.
|
com.mockturtlesolutions.snifflib.xppauttools.database |
Base classes for the repository storage framework of xppauttools
|
Modifier and Type | Method and Description |
---|---|
ParameterSetStorage |
MCMCRunPostgreSQL.getCandidateParameterStorage()
Returns the repository storage for the candidate parameters of this
run.
|
ParameterSetStorage |
MCMCRunDOM.getCandidateParameterStorage()
Returns the repository storage for the candidate parameters of this
run.
|
ParameterSetStorage |
MCMCRunSQL.getCandidateParameterStorage()
Returns the repository storage for the candidate parameters of this
run.
|
ParameterSetStorage |
MCMCRunXML.getCandidateParameterStorage()
Returns the repository storage for the candidate parameters of this
run.
|
ParameterSetStorage |
MCMCRunStorage.getCandidateParameterStorage() |
ParameterSetStorage |
MCMCRunPostgreSQL.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this run's
proposal distribution.
|
ParameterSetStorage |
MCMCRunDOM.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this run's
proposal distribution.
|
ParameterSetStorage |
ProposalDistributionDOM.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this
proposal distribution.
|
ParameterSetStorage |
ProposalDistributionStorage.getMixingParameterStorage() |
ParameterSetStorage |
ProposalDistributionSQL.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this
proposal distribution.
|
ParameterSetStorage |
MCMCRunSQL.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this run's
proposal distribution.
|
ParameterSetStorage |
ProposalDistributionXML.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this
proposal distribution.
|
ParameterSetStorage |
MCMCRunXML.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this run's
proposal distribution.
|
ParameterSetStorage |
MCMCRunStorage.getMixingParameterStorage() |
ParameterSetStorage |
MCMCRunPostgreSQL.getPreviousParameterStorage()
Returns the repository storage for the previous parameters of this
run.
|
ParameterSetStorage |
MCMCRunDOM.getPreviousParameterStorage()
Returns the repository storage for the previous parameters of this
run.
|
ParameterSetStorage |
MCMCRunSQL.getPreviousParameterStorage()
Returns the repository storage for the previous parameters of this
run.
|
ParameterSetStorage |
MCMCRunXML.getPreviousParameterStorage()
Returns the repository storage for the previous parameters of this
run.
|
ParameterSetStorage |
MCMCRunStorage.getPreviousParameterStorage() |
ParameterSetStorage |
MCMCRunPostgreSQL.getReferenceParameterStorage()
Returns the repository storage for the reference parameters of this
run.
|
ParameterSetStorage |
MCMCRunDOM.getReferenceParameterStorage()
Returns the repository storage for the reference parameters of this
run.
|
ParameterSetStorage |
MCMCRunSQL.getReferenceParameterStorage()
Returns the repository storage for the reference parameters of this
run.
|
ParameterSetStorage |
MCMCRunXML.getReferenceParameterStorage()
Returns the repository storage for the reference parameters of this
run.
|
ParameterSetStorage |
MCMCRunStorage.getReferenceParameterStorage() |
Modifier and Type | Method and Description |
---|---|
void |
MCMCRunPostgreSQL.restartUsingParametersFrom(ParameterSetStorage stor)
Restarts the chain with a new candidate parameter set copied from the values in the given
parameter storage.
|
void |
MCMCRunDOM.restartUsingParametersFrom(ParameterSetStorage stor)
Restarts the chain with a new candidate parameter set copied from the values in the given
parameter storage.
|
void |
MCMCRunSQL.restartUsingParametersFrom(ParameterSetStorage stor)
Restarts the chain with a new candidate parameter set copied from the values in the given
parameter storage.
|
void |
MCMCRunTransferAgent.restartUsingParametersFrom(ParameterSetStorage stor)
Restarts the chain with a new candidate parameter set copied from the values in the given
parameter storage.
|
void |
MCMCRunXML.restartUsingParametersFrom(ParameterSetStorage stor)
Restarts the chain with a new candidate parameter set copied from the values in the given
parameter storage.
|
void |
MCMCRunStorage.restartUsingParametersFrom(ParameterSetStorage elem) |
void |
ProposalDistributionDOM.setNewLikelihood(DblMatrixStorage likestorage,
ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
ProposalDistributionStorage.setNewLikelihood(DblMatrixStorage likestorage,
ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
GaussianProposalXML.setNewLikelihood(DblMatrixStorage likestorage,
ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
ProposalDistributionSQL.setNewLikelihood(DblMatrixStorage likestorage,
ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
GaussianProposalDOM.setNewLikelihood(DblMatrixStorage likestorage,
ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
ProposalDistributionXML.setNewLikelihood(DblMatrixStorage likestorage,
ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
ProposalDistributionDOM.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage)
Old is given as the new should be generated from the old in a Markov process.
|
void |
GaussianProposalSQL.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
ProposalDistributionStorage.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
GaussianProposalXML.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
ProposalDistributionSQL.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage)
This default implementation doesn't do anything other than copy old parameter set to the
new parameter set.
|
void |
GaussianProposalDOM.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
ProposalDistributionXML.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage)
This default implementation doesn't do anything other than copy old parameter set to the
new parameter set.
|
void |
MCMCRunPostgreSQL.setReferenceParametersFrom(ParameterSetStorage P) |
void |
MCMCRunDOM.setReferenceParametersFrom(ParameterSetStorage P) |
void |
MCMCRunSQL.setReferenceParametersFrom(ParameterSetStorage P) |
void |
MCMCRunXML.setReferenceParametersFrom(ParameterSetStorage P) |
void |
MCMCRunStorage.setReferenceParametersFrom(ParameterSetStorage P) |
Modifier and Type | Method and Description |
---|---|
ParameterSetStorage |
MCMCRunPanel.getCandidateParameterStorage()
Returns the repository storage for the candidate parameters of this
run.
|
ParameterSetStorage |
MCMCRunFrame.getCandidateParameterStorage()
Returns the repository storage for the candidate parameters of this
run.
|
ParameterSetStorage |
GaussianProposalFrame.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this
proposal distribution.
|
ParameterSetStorage |
MCMCRunPanel.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this run's
proposal distribution.
|
ParameterSetStorage |
MCMCRunFrame.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this run's
proposal distribution.
|
ParameterSetStorage |
GaussianProposalPanel.getMixingParameterStorage()
Returns the repository storage for the mixing parameters of this
proposal distribution.
|
ParameterSetStorage |
MCMCRunPanel.getPreviousParameterStorage()
Returns the repository storage for the previous parameters of this
run.
|
ParameterSetStorage |
MCMCRunFrame.getPreviousParameterStorage()
Returns the repository storage for the previous parameters of this
run.
|
ParameterSetStorage |
MCMCRunPanel.getReferenceParameterStorage()
Returns the repository storage for the reference parameters of this
run.
|
ParameterSetStorage |
MCMCRunFrame.getReferenceParameterStorage()
Returns the repository storage for the reference parameters of this
run.
|
Modifier and Type | Method and Description |
---|---|
void |
MCMCRunPanel.restartUsingParametersFrom(ParameterSetStorage stor)
Restarts the chain with a new candidate parameter set copied from the values in the given
parameter storage.
|
void |
MCMCRunFrame.restartUsingParametersFrom(ParameterSetStorage stor)
Restarts the chain with a new candidate parameter set copied from the values in the given
parameter storage.
|
void |
GaussianProposalFrame.setNewLikelihood(DblMatrixStorage likestorage,
ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
GaussianProposalPanel.setNewLikelihood(DblMatrixStorage likestorage,
ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
GaussianProposalFrame.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
GaussianProposalPanel.setNewProposal(ParameterSetStorage oldstorage,
ParameterSetStorage proposalstorage) |
void |
MCMCRunPanel.setReferenceParametersFrom(ParameterSetStorage P) |
void |
MCMCRunFrame.setReferenceParametersFrom(ParameterSetStorage P) |
Modifier and Type | Interface and Description |
---|---|
interface |
CanonicalVariableStorage |
Modifier and Type | Class and Description |
---|---|
class |
CanonicalVariableDOM |
class |
CanonicalVariablePostgreSQL |
class |
CanonicalVariableSQL |
class |
CanonicalVariableXML |
class |
ParameterSetDOM |
class |
ParameterSetPostgreSQL |
class |
ParameterSetSQL |
class |
ParameterSetSQLite |
class |
ParameterSetXML |
Modifier and Type | Class and Description |
---|---|
class |
CanonicalVariableFrame
View and edit parameter set storages through a repository framework.
|
class |
CanonicalVariablePanel
View and edit parameter set storages through a repository framework.
|
class |
ParameterSetFrame
View and edit parameter set storages through a repository framework.
|
class |
ParameterSetPanel
View and edit parameter set storages through a repository framework.
|
Modifier and Type | Method and Description |
---|---|
void |
XppOdeXML.setXppParamsFrom(ParameterSetStorage var)
Set parameters in this XppOdeStorage to the values
of any corresponding parameter in the ParameterSetStorage.
|
void |
XppOdePostgreSQL.setXppParamsFrom(ParameterSetStorage var)
Set parameters in this XppOdeStorage to the values
of any corresponding parameter in the ParameterSetStorage.
|
void |
XppOdeTransferAgent.setXppParamsFrom(ParameterSetStorage var)
Set parameters in this XppOdeStorage to the values
of any corresponding parameter in the ParameterSetStorage.
|
void |
XppOdeSQLite.setXppParamsFrom(ParameterSetStorage var)
Set parameters in this XppOdeStorage to the values
of any corresponding parameter in the ParameterSetStorage.
|
void |
XppOdeStorage.setXppParamsFrom(ParameterSetStorage var) |
void |
XppOdeDOM.setXppParamsFrom(ParameterSetStorage var)
Set parameters in this XppOdeStorage to the values
of any corresponding parameter in the ParameterSetStorage.
|
Copyright © 2011, 2013. Daniel P. Dougherty