com.mockturtlesolutions.snifflib.integration

Class BasicODE

java.lang.Object

com.mockturtlesolutions.snifflib.integration.BasicODE

All Implemented Interfaces:

NamedParameters, VectorValued

public class BasicODE
extends java.lang.Object
implements NamedParameters, VectorValued

The getDeriv() and related methods do not accept input arguments. This intentional simplification was utilized so that more complicated calling sequences would not have to be implemented. In particular the inputs to a derivative RHS are logically divided into time and variable components. The inventiveness of function calls, vectorization of calls during Jacobian calculations etc is relegated to the ODE solver rather than requiring the user to implement various method invocations.

Field Summary

Fields

Modifier and Type	Field and Description
protected DblParamSet	Param
protected int	Size
protected DblMatrix	T
protected DblMatrix	Y

Constructor Summary

Constructors

Constructor and Description
BasicODE()

Method Summary

Methods

Modifier and Type	Method and Description
DblMatrix	getDeriv()
DblMatrix	getDerivChk()
DblMatrix	getEvents()
DblMatrix	getJacobn()
DblMatrix	getJacobnPattern()
DblMatrix	getParam(java.lang.String name)
DblMatrix	getT()
DblMatrix	getValue()
DblMatrix	getY()
boolean	hasParameter(java.lang.String n)
java.lang.String[]	parameterSet()
void	replaceParams(DblParamSet X)
void	setParam(java.lang.String name, DblMatrix value)
void	setT(DblMatrix T) This sets the T pointer of the model to the input DblMatrix.
void	setY(DblMatrix Y) This sets the Y pointer of the model to the input DblMatrix.
int	Size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

Param

protected DblParamSet Param

T

protected DblMatrix T

Y

protected DblMatrix Y

Size

protected int Size

Constructor Detail

BasicODE

public BasicODE()

Method Detail

Size

public int Size()

setT

public void setT(DblMatrix T)

This sets the T pointer of the model to the input DblMatrix.

setY

public void setY(DblMatrix Y)

This sets the Y pointer of the model to the input DblMatrix.

getT

public DblMatrix getT()

getY

public DblMatrix getY()

getParam

public DblMatrix getParam(java.lang.String name)

Specified by:

getParam in interface NamedParameters

hasParameter

public boolean hasParameter(java.lang.String n)

Specified by:

hasParameter in interface NamedParameters

setParam

public void setParam(java.lang.String name,
            DblMatrix value)

Specified by:

setParam in interface NamedParameters

replaceParams

public void replaceParams(DblParamSet X)

Specified by:

replaceParams in interface NamedParameters

parameterSet

public java.lang.String[] parameterSet()

Specified by:

parameterSet in interface NamedParameters

getDerivChk

public DblMatrix getDerivChk()

getDeriv

public DblMatrix getDeriv()

getJacobn

public DblMatrix getJacobn()

getJacobnPattern

public DblMatrix getJacobnPattern()

getEvents

public DblMatrix getEvents()

getValue

public DblMatrix getValue()

Specified by:

getValue in interface VectorValued