com.mockturtlesolutions.snifflib.statmodeltools.database

Class GLMStorageDOM

java.lang.Object

com.mockturtlesolutions.snifflib.reposconfig.database.AbstractRepositoryStorage

com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStorageDOM

com.mockturtlesolutions.snifflib.statmodeltools.database.StatisticalModelDOM

com.mockturtlesolutions.snifflib.statmodeltools.database.GLMStorageDOM

All Implemented Interfaces:

DeclaredParameters, DeclaredVariables, DOMStorable, RepositoryStorage, RepositoryStorageTransfer, BackedByDataSet, BackedByFlatFileSetStorage, BackedByNamedParameters, GLMStorage, StatisticalModelStorage

public class GLMStorageDOM
extends StatisticalModelDOM
implements GLMStorage

Field Summary

Fields inherited from class com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStorageDOM

document, dostylesheets, storageRoot, templateDOM

Fields inherited from class com.mockturtlesolutions.snifflib.reposconfig.database.AbstractRepositoryStorage

nickname, reposListeners, transferAgent

Constructor Summary

Constructors

Constructor and Description
GLMStorageDOM()

Method Summary

Methods

Modifier and Type	Method and Description
void	addClassTerm(java.lang.String varname)
void	addDoubleParameter(java.lang.String param)
void	addMappedVariable(java.lang.String var)
void	addRandomTerm(java.lang.String varname)
void	addVariable(java.lang.String var)
void	declareParameter(java.lang.String var)
void	declareVariable(java.lang.String var)
java.lang.String	getAnalysisByTerms()
protected org.w3c.dom.Element	getClassTerm(java.lang.String term)
java.util.Vector	getClassTerms()
DataSet	getDataSet()
java.lang.String	getDataSetColumnMappedFor(java.lang.String modelvarname)
java.util.Set	getDeclaredParameters()
java.util.Set	getDeclaredVariables()
java.lang.Class	getDefaultGraphicalEditorClass()
java.lang.Class	getDOMStorageClass() Returns a DOM storage variant of this storage instance.
protected org.w3c.dom.Element	getDoubleParameter(java.lang.String expname)
java.lang.String	getDoubleParameterValueFor(java.lang.String param)
java.lang.String	getFlatFileSetStorageNickname()
protected org.w3c.dom.Element	getMappedVariable(java.lang.String term)
java.util.Vector	getMappedVariables()
java.lang.String	getModelLeftHandSide()
java.lang.String	getModelRightHandSideTerms()
protected org.w3c.dom.Element	getParameter(java.lang.String term)
java.util.Vector	getParameterNames()
DblParamSet	getParameterSet()
protected org.w3c.dom.Element	getRandomTerm(java.lang.String term)
java.util.Vector	getRandomTerms()
java.lang.String	getRootElementName()
StatisticalModel	getStatisticalModel()
java.lang.String	getStatisticalModelClassName() The default StatisticalModel class for analysis of this storage.
java.lang.Class	getStorageTransferAgentClass() This method should be overridden by subclasses wanting to extend the transfer method.
protected org.w3c.dom.Element	getVariable(java.lang.String term)
java.util.Vector	getVariables()
void	removeClassTerm(java.lang.String varname)
void	removeDoubleParameter(java.lang.String param)
void	removeMappedVariable(java.lang.String var)
void	removeRandomTerm(java.lang.String varname)
void	removeVariable(java.lang.String var)
void	revokeParameter(java.lang.String var)
void	revokeVariable(java.lang.String var)
void	setAnalysisByTerms(java.lang.String varname)
void	setDataSetColumnMappedFor(java.lang.String modelvarname, java.lang.String datacolname)
void	setDoubleParameterValueFor(java.lang.String param, java.lang.String val)
void	setFlatFileSetStorageNickname(java.lang.String s)
void	setModelLeftHandSide(java.lang.String varname)
void	setModelRightHandSideTerms(java.lang.String varname)
void	setStatisticalModelClassName(java.lang.String s)
protected void	specifyStorage(org.w3c.dom.Document doc, org.w3c.dom.Element ro)

Methods inherited from class com.mockturtlesolutions.snifflib.statmodeltools.database.StatisticalModelDOM

getLikelihoodStorage, getLikelihoodStorageConfigClass, getLikelihoodStorageNickname, getLikelihoodStorageRepositoryName, getPriorStorageConfigClass, getPriorStorageNickname, getPriorStorageRepositoryName, setLikelihoodStorageConfigClass, setLikelihoodStorageNickname, setLikelihoodStorageRepositoryName, setPriorStorageConfigClass, setPriorStorageNickname, setPriorStorageRepositoryName

Methods inherited from class com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStorageDOM

createElementByName, getAttributeByElementName, getComment, getCommentElementName, getCreatedBy, getCreatedByAttributeName, getCreatedOn, getCreatedOnAttributeName, getDocument, getEnabled, getEnabledAttributeName, getNickname, getNicknameAttributeName, getStorage, getStorageRoot, getStylesheetRef, getTemplateDOM, getTextNodeByElementName, isValidXML, readXML, setComment, setCreatedBy, setCreatedOn, setEnabled, setNickname, setProcessingInstructions, setTextNodeByElementName, show, show, useStyleSheetInfo, usingStyleSheetInfo, writeTemplateXML, writeXML

Methods inherited from class com.mockturtlesolutions.snifflib.reposconfig.database.AbstractRepositoryStorage

addRepositoryListener, afterCopyStorage, afterTransferStorage, beforeCopyStorage, beforeTransferStorage, copyStorage, copyStorageCommands, getStorageCalculationsAgentClass, removeRepositoryListener, transferStorage, transferStorageCommands

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStorage

addRepositoryListener, getComment, getCreatedBy, getCreatedOn, getEnabled, getNickname, removeRepositoryListener, setComment, setCreatedBy, setCreatedOn, setEnabled, setNickname

Methods inherited from interface com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStorageTransfer

afterCopyStorage, afterTransferStorage, beforeCopyStorage, beforeTransferStorage, copyStorage, copyStorageCommands, transferStorage, transferStorageCommands

Constructor Detail

GLMStorageDOM

public GLMStorageDOM()

Method Detail

getDOMStorageClass

public java.lang.Class getDOMStorageClass()

Description copied from class: AbstractRepositoryStorage

Returns a DOM storage variant of this storage instance. DOM storage classes, because they are independent of any repository, are by definition transient and often used when transfering amond RepositoryStorage classes which may be more persistent (e.g. backed by an XML or an SQL repository).

Specified by:

getDOMStorageClass in interface DOMStorable

Overrides:

getDOMStorageClass in class StatisticalModelDOM

getRootElementName

public java.lang.String getRootElementName()

Overrides:

getRootElementName in class StatisticalModelDOM

getStorageTransferAgentClass

public java.lang.Class getStorageTransferAgentClass()

Description copied from class: AbstractRepositoryStorage

This method should be overridden by subclasses wanting to extend the transfer method.

Overrides:

getStorageTransferAgentClass in class StatisticalModelDOM

getStatisticalModelClassName

public java.lang.String getStatisticalModelClassName()

Description copied from interface: StatisticalModelStorage

The default StatisticalModel class for analysis of this storage.

Specified by:

getStatisticalModelClassName in interface StatisticalModelStorage

setStatisticalModelClassName

public void setStatisticalModelClassName(java.lang.String s)

Specified by:

setStatisticalModelClassName in interface StatisticalModelStorage

specifyStorage

protected void specifyStorage(org.w3c.dom.Document doc,
                  org.w3c.dom.Element ro)

Overrides:

specifyStorage in class StatisticalModelDOM

getClassTerm

protected org.w3c.dom.Element getClassTerm(java.lang.String term)

getParameter

protected org.w3c.dom.Element getParameter(java.lang.String term)

getMappedVariable

protected org.w3c.dom.Element getMappedVariable(java.lang.String term)

getVariable

protected org.w3c.dom.Element getVariable(java.lang.String term)

getRandomTerm

protected org.w3c.dom.Element getRandomTerm(java.lang.String term)

getModelLeftHandSide

public java.lang.String getModelLeftHandSide()

Specified by:

getModelLeftHandSide in interface GLMStorage

setModelLeftHandSide

public void setModelLeftHandSide(java.lang.String varname)

Specified by:

setModelLeftHandSide in interface GLMStorage

addClassTerm

public void addClassTerm(java.lang.String varname)

Specified by:

addClassTerm in interface GLMStorage

removeClassTerm

public void removeClassTerm(java.lang.String varname)

Specified by:

removeClassTerm in interface GLMStorage

getClassTerms

public java.util.Vector getClassTerms()

Specified by:

getClassTerms in interface GLMStorage

setAnalysisByTerms

public void setAnalysisByTerms(java.lang.String varname)

Specified by:

setAnalysisByTerms in interface GLMStorage

getAnalysisByTerms

public java.lang.String getAnalysisByTerms()

Specified by:

getAnalysisByTerms in interface GLMStorage

setModelRightHandSideTerms

public void setModelRightHandSideTerms(java.lang.String varname)

Specified by:

setModelRightHandSideTerms in interface GLMStorage

getModelRightHandSideTerms

public java.lang.String getModelRightHandSideTerms()

Specified by:

getModelRightHandSideTerms in interface GLMStorage

getVariables

public java.util.Vector getVariables()

Specified by:

getVariables in interface GLMStorage

addVariable

public void addVariable(java.lang.String var)

Specified by:

addVariable in interface GLMStorage

removeVariable

public void removeVariable(java.lang.String var)

Specified by:

removeVariable in interface GLMStorage

getDoubleParameter

protected org.w3c.dom.Element getDoubleParameter(java.lang.String expname)

addRandomTerm

public void addRandomTerm(java.lang.String varname)

Specified by:

addRandomTerm in interface GLMStorage

getParameterNames

public java.util.Vector getParameterNames()

Specified by:

getParameterNames in interface BackedByNamedParameters

getParameterSet

public DblParamSet getParameterSet()

Specified by:

getParameterSet in interface BackedByNamedParameters

addDoubleParameter

public void addDoubleParameter(java.lang.String param)

Specified by:

addDoubleParameter in interface BackedByNamedParameters

removeDoubleParameter

public void removeDoubleParameter(java.lang.String param)

Specified by:

removeDoubleParameter in interface BackedByNamedParameters

setDoubleParameterValueFor

public void setDoubleParameterValueFor(java.lang.String param,
                              java.lang.String val)

Specified by:

setDoubleParameterValueFor in interface BackedByNamedParameters

getDoubleParameterValueFor

public java.lang.String getDoubleParameterValueFor(java.lang.String param)

Specified by:

getDoubleParameterValueFor in interface BackedByNamedParameters

getDataSet

public DataSet getDataSet()

Specified by:

getDataSet in interface BackedByDataSet

setFlatFileSetStorageNickname

public void setFlatFileSetStorageNickname(java.lang.String s)

Specified by:

setFlatFileSetStorageNickname in interface BackedByFlatFileSetStorage

getFlatFileSetStorageNickname

public java.lang.String getFlatFileSetStorageNickname()

Specified by:

getFlatFileSetStorageNickname in interface BackedByFlatFileSetStorage

getDefaultGraphicalEditorClass

public java.lang.Class getDefaultGraphicalEditorClass()

Specified by:

getDefaultGraphicalEditorClass in interface RepositoryStorage

Overrides:

getDefaultGraphicalEditorClass in class RepositoryStorageDOM

getStatisticalModel

public StatisticalModel getStatisticalModel()

Specified by:

getStatisticalModel in interface StatisticalModelStorage

removeRandomTerm

public void removeRandomTerm(java.lang.String varname)

Specified by:

removeRandomTerm in interface GLMStorage

getRandomTerms

public java.util.Vector getRandomTerms()

Specified by:

getRandomTerms in interface GLMStorage

getDeclaredVariables

public java.util.Set getDeclaredVariables()

Specified by:

getDeclaredVariables in interface DeclaredVariables

declareVariable

public void declareVariable(java.lang.String var)

Specified by:

declareVariable in interface DeclaredVariables

revokeVariable

public void revokeVariable(java.lang.String var)

Specified by:

revokeVariable in interface DeclaredVariables

getDeclaredParameters

public java.util.Set getDeclaredParameters()

Specified by:

getDeclaredParameters in interface DeclaredParameters

declareParameter

public void declareParameter(java.lang.String var)

Specified by:

declareParameter in interface DeclaredParameters

revokeParameter

public void revokeParameter(java.lang.String var)

Specified by:

revokeParameter in interface DeclaredParameters

getMappedVariables

public java.util.Vector getMappedVariables()

Specified by:

getMappedVariables in interface BackedByDataSet

addMappedVariable

public void addMappedVariable(java.lang.String var)

Specified by:

addMappedVariable in interface BackedByDataSet

removeMappedVariable

public void removeMappedVariable(java.lang.String var)

Specified by:

removeMappedVariable in interface BackedByDataSet

getDataSetColumnMappedFor

public java.lang.String getDataSetColumnMappedFor(java.lang.String modelvarname)

Specified by:

getDataSetColumnMappedFor in interface BackedByDataSet

setDataSetColumnMappedFor

public void setDataSetColumnMappedFor(java.lang.String modelvarname,
                             java.lang.String datacolname)

Specified by:

setDataSetColumnMappedFor in interface BackedByDataSet