com.mockturtlesolutions.snifflib.mcmctools.workbench

Class GaussianProposalPanel

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

com.mockturtlesolutions.snifflib.mcmctools.workbench.GaussianProposalPanel

All Implemented Interfaces:

GaussianProposalStorage, ProposalDistributionStorage, DOMStorable, RepositoryStorage, RepositoryStorageTransfer, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible

public class GaussianProposalPanel
extends javax.swing.JPanel
implements GaussianProposalStorage

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	GaussianProposalPanel.ParamTableModel

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
protected ProposalDistributionConfig	Config
protected ProposalDistributionConnectivity	Connection

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
GaussianProposalPanel()

Method Summary

Methods

Modifier and Type	Method and Description
void	addRepositoryListener(RepositoryListener l)
void	afterCopyStorage()
void	afterTransferStorage()
void	beforeCopyStorage()
void	beforeTransferStorage()
void	copyStorage(RepositoryStorage x)
void	copyStorageCommands(RepositoryStorage x)
void	executeTransfer()
void	fireRepositoryChanged(RepositoryEvent ev)
java.util.Vector	getAllLogNormal()
java.lang.String	getComment() Gets the descriptive comment for this Wedge inverse problem as a whole.
java.lang.String	getCreatedBy()
java.lang.String	getCreatedOn()
java.lang.Class	getDefaultGraphicalEditorClass()
java.lang.Class	getDOMStorageClass()
java.lang.String	getEnabled() Gets the state of the (possibly remote) storage.
RepositoryElement	getMixingParametersRepositoryElement()
ParameterSetStorage	getMixingParameterStorage() Returns the repository storage for the mixing parameters of this proposal distribution.
RepositoryElement	getNewParametersRepositoryElement()
java.lang.String	getNickname() Gets the project name for this Wedge inverse problem.
RepositoryElement	getOldParametersRepositoryElement()
java.lang.String	getRepository()
java.lang.Class	getStorageTransferAgentClass()
java.lang.String	isLogNormal(java.lang.String param) Returns true if the given parameter is considered log-normal.
void	removeRepositoryListener(RepositoryListener l)
void	setAllLogNormal(java.util.Collection pnames) Sets up all parameters whose name appears as a String in the given Collection to be sampled from a Log-Normal distribution.
void	setComment(java.lang.String c)
void	setCreatedBy(java.lang.String c)
void	setCreatedOn(java.lang.String c)
void	setEditable(boolean b)
void	setEnabled(java.lang.String n) Sets the enabled state of the (possibly remote) storage instance.
void	setLogNormal(java.lang.String pname) Sets up the given parameter to be sampled from a Log-Normal distribution.
void	setMixingParametersRepositoryElement(RepositoryElement el)
void	setNewLikelihood(DblMatrixStorage likestorage, ParameterSetStorage oldstorage, ParameterSetStorage proposalstorage)
void	setNewParametersRepositoryElement(RepositoryElement el)
void	setNewProposal(ParameterSetStorage oldstorage, ParameterSetStorage proposalstorage)
void	setNickname(java.lang.String n) Sets the project name for this Wedge inverse problem.
void	setOldParametersRepositoryElement(RepositoryElement el)
void	setRepository(java.lang.String repos)
void	transferStorage(RepositoryStorage x)
void	transferStorageCommands(RepositoryStorage x)
void	unSetAllLogNormal(java.util.Collection pnames) Puts log normal setting back to default.
void	unSetLogNormal(java.lang.String pname) Puts all log normal settings back to default.

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

Connection

protected ProposalDistributionConnectivity Connection

Config

protected ProposalDistributionConfig Config

Constructor Detail

GaussianProposalPanel

public GaussianProposalPanel()

Method Detail

setEditable

public void setEditable(boolean b)

executeTransfer

public void executeTransfer()

fireRepositoryChanged

public void fireRepositoryChanged(RepositoryEvent ev)

setRepository

public void setRepository(java.lang.String repos)

getRepository

public java.lang.String getRepository()

getDOMStorageClass

public java.lang.Class getDOMStorageClass()

Specified by:

getDOMStorageClass in interface DOMStorable

getDefaultGraphicalEditorClass

public java.lang.Class getDefaultGraphicalEditorClass()

Specified by:

getDefaultGraphicalEditorClass in interface RepositoryStorage

getStorageTransferAgentClass

public java.lang.Class getStorageTransferAgentClass()

transferStorage

public void transferStorage(RepositoryStorage x)

Specified by:

transferStorage in interface RepositoryStorageTransfer

copyStorage

public void copyStorage(RepositoryStorage x)

Specified by:

copyStorage in interface RepositoryStorageTransfer

transferStorageCommands

public void transferStorageCommands(RepositoryStorage x)

Specified by:

transferStorageCommands in interface RepositoryStorageTransfer

copyStorageCommands

public void copyStorageCommands(RepositoryStorage x)

Specified by:

copyStorageCommands in interface RepositoryStorageTransfer

beforeTransferStorage

public void beforeTransferStorage()

Specified by:

beforeTransferStorage in interface RepositoryStorageTransfer

afterTransferStorage

public void afterTransferStorage()

Specified by:

afterTransferStorage in interface RepositoryStorageTransfer

beforeCopyStorage

public void beforeCopyStorage()

Specified by:

beforeCopyStorage in interface RepositoryStorageTransfer

afterCopyStorage

public void afterCopyStorage()

Specified by:

afterCopyStorage in interface RepositoryStorageTransfer

removeRepositoryListener

public void removeRepositoryListener(RepositoryListener l)

Specified by:

removeRepositoryListener in interface RepositoryStorage

addRepositoryListener

public void addRepositoryListener(RepositoryListener l)

Specified by:

addRepositoryListener in interface RepositoryStorage

setEnabled

public void setEnabled(java.lang.String n)

Description copied from interface: RepositoryStorage

Sets the enabled state of the (possibly remote) storage instance. Typically a storage is backed by static information stored in a database.

Specified by:

setEnabled in interface RepositoryStorage

getEnabled

public java.lang.String getEnabled()

Description copied from interface: RepositoryStorage

Gets the state of the (possibly remote) storage. For example, dis-enabled storages may be slated for deletion from some repostories. Typically a storage is backed by static information stored in a database.

Specified by:

getEnabled in interface RepositoryStorage

getNickname

public java.lang.String getNickname()

Description copied from interface: RepositoryStorage

Gets the project name for this Wedge inverse problem.

Specified by:

getNickname in interface RepositoryStorage

setNickname

public void setNickname(java.lang.String n)

Description copied from interface: RepositoryStorage

Sets the project name for this Wedge inverse problem.

Specified by:

setNickname in interface RepositoryStorage

setComment

public void setComment(java.lang.String c)

Specified by:

setComment in interface RepositoryStorage

getComment

public java.lang.String getComment()

Description copied from interface: RepositoryStorage

Gets the descriptive comment for this Wedge inverse problem as a whole.

Specified by:

getComment in interface RepositoryStorage

setCreatedOn

public void setCreatedOn(java.lang.String c)

Specified by:

setCreatedOn in interface RepositoryStorage

getCreatedOn

public java.lang.String getCreatedOn()

Specified by:

getCreatedOn in interface RepositoryStorage

setCreatedBy

public void setCreatedBy(java.lang.String c)

Specified by:

setCreatedBy in interface RepositoryStorage

getCreatedBy

public java.lang.String getCreatedBy()

Specified by:

getCreatedBy in interface RepositoryStorage

getMixingParameterStorage

public ParameterSetStorage getMixingParameterStorage()

Returns the repository storage for the mixing parameters of this proposal distribution. This is a convenience method which establishes its own connection to the repository internally. As a result, this method may be less efficient than using a previously esatablished connection or a connection pool.

Specified by:

getMixingParameterStorage in interface ProposalDistributionStorage

getMixingParametersRepositoryElement

public RepositoryElement getMixingParametersRepositoryElement()

Specified by:

getMixingParametersRepositoryElement in interface ProposalDistributionStorage

setMixingParametersRepositoryElement

public void setMixingParametersRepositoryElement(RepositoryElement el)

Specified by:

setMixingParametersRepositoryElement in interface ProposalDistributionStorage

getNewParametersRepositoryElement

public RepositoryElement getNewParametersRepositoryElement()

Specified by:

getNewParametersRepositoryElement in interface ProposalDistributionStorage

setNewParametersRepositoryElement

public void setNewParametersRepositoryElement(RepositoryElement el)

Specified by:

setNewParametersRepositoryElement in interface ProposalDistributionStorage

getOldParametersRepositoryElement

public RepositoryElement getOldParametersRepositoryElement()

Specified by:

getOldParametersRepositoryElement in interface ProposalDistributionStorage

setOldParametersRepositoryElement

public void setOldParametersRepositoryElement(RepositoryElement el)

Specified by:

setOldParametersRepositoryElement in interface ProposalDistributionStorage

setNewProposal

public void setNewProposal(ParameterSetStorage oldstorage,
                  ParameterSetStorage proposalstorage)

Specified by:

setNewProposal in interface ProposalDistributionStorage

setNewLikelihood

public void setNewLikelihood(DblMatrixStorage likestorage,
                    ParameterSetStorage oldstorage,
                    ParameterSetStorage proposalstorage)

Specified by:

setNewLikelihood in interface ProposalDistributionStorage

setLogNormal

public void setLogNormal(java.lang.String pname)

Description copied from interface: GaussianProposalStorage

Sets up the given parameter to be sampled from a Log-Normal distribution. The mixing standard deviation is automatically overwritten to be 0.1.

Specified by:

setLogNormal in interface GaussianProposalStorage

getAllLogNormal

public java.util.Vector getAllLogNormal()

Specified by:

getAllLogNormal in interface GaussianProposalStorage

unSetLogNormal

public void unSetLogNormal(java.lang.String pname)

Description copied from interface: GaussianProposalStorage

Puts all log normal settings back to default.

Specified by:

unSetLogNormal in interface GaussianProposalStorage

setAllLogNormal

public void setAllLogNormal(java.util.Collection pnames)

Description copied from interface: GaussianProposalStorage

Sets up all parameters whose name appears as a String in the given Collection to be sampled from a Log-Normal distribution. The mixing standard deviation is automatically overwritten to be 0.1.

Specified by:

setAllLogNormal in interface GaussianProposalStorage

unSetAllLogNormal

public void unSetAllLogNormal(java.util.Collection pnames)

Description copied from interface: GaussianProposalStorage

Puts log normal setting back to default.

Specified by:

unSetAllLogNormal in interface GaussianProposalStorage

isLogNormal

public java.lang.String isLogNormal(java.lang.String param)

Description copied from interface: GaussianProposalStorage

Returns true if the given parameter is considered log-normal. This method should respond to the current setting of ReverseLogNormalSense

Specified by:

isLogNormal in interface GaussianProposalStorage