DataSet model
javax.swing.JTable table
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JComboBox<E> dataType
javax.swing.JTextField headerBox
javax.swing.JLabel dataTypeLabel
java.util.Vector<E> okcancelListeners
java.awt.Container contentPane
javax.swing.JRadioButton radioBefore
javax.swing.JRadioButton radioAfter
DataSet model
javax.swing.JTable table
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JSpinner numColsEdit
javax.swing.JLabel numColsLabel
java.util.Vector<E> okcancelListeners
java.awt.Container contentPane
javax.swing.JRadioButton radioBefore
javax.swing.JRadioButton radioAfter
DataSetAdapter adapter
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> okcancelListeners
java.awt.Container contentPane
javax.swing.JPanel dataColumnsBox
javax.swing.JPanel modelVariableBox
DataSet data
DataSetPanel dataPane
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> okcancelListeners
java.awt.Container contentPane
boolean isEditable
DataSet dataSet
javax.swing.JButton exportDataButton
javax.swing.JButton printButton
javax.swing.JButton importButton
javax.swing.JButton addColumns
javax.swing.JButton removeColumns
javax.swing.JButton addRows
javax.swing.JButton deleteRows
java.io.File lastGoodPath
javax.swing.JTable table
javax.swing.JScrollPane jsp
AddColumnsDialog addColumnsDialog
AddRowsDialog addRowsDialog
javax.swing.JButton modifyColumnHeader
javax.swing.JList<E> rowHeaderList
private void readObject(java.io.ObjectInputStream in) throws java.lang.ClassNotFoundException, java.io.IOException
java.lang.ClassNotFoundException
java.io.IOException
private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
java.io.IOException
int[] Permute
int[] IPermute
Counter Counter
int N
DataSet dataSet
DblMatrixStorage stor
MatrixEditorPanel matrixPanel
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> oklisteners
java.util.Vector<E> cancellisteners
javax.swing.JSpinner sliceDim1Slider
javax.swing.JSpinner sliceDim2Slider
javax.swing.JTable coordsTable
javax.swing.JTable valuesTable
com.mockturtlesolutions.snifflib.datatypes.workbench.MatrixEditorPanel.CoordinatesTableModel coordsTableModel
com.mockturtlesolutions.snifflib.datatypes.workbench.MatrixEditorPanel.MatrixTableModel valuesTableModel
DblMatrix matrix
javax.swing.JTextField sizeText
int[] requestedMatrixSize
java.util.Vector<E> sizeChangeListeners
boolean allowResizingText
java.util.Vector<E> reposListeners
MatrixStorageConfig Config
MatrixStorageConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
MatrixStoragePrefs Prefs
MatrixFindNameDialog findMatrix
boolean NoCallbackChangeMode
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
ReposConfigFrame repositoryEditor
MatrixEditorPanel matrixPanel
MatrixEditorFrame dialog
javax.swing.JRadioButton enabledRadio
javax.swing.JButton editPrefsButton
javax.swing.JButton uploadButton
javax.swing.JButton repositoryView
TemplateTextArea commentTextArea
javax.swing.JTextField createdOnText
javax.swing.JTextField createdByText
RepositoryStorageTransferAgent transferAgent
DblMatrixStorage backingStorage
javax.swing.JTable moduletable
javax.swing.table.DefaultTableModel tableModel
java.util.LinkedHashMap<K,V> modules
java.net.URLClassLoader classloader
javax.swing.JTextArea description
javax.swing.JTextField authortext
javax.swing.JTextField versiontext
javax.swing.JTextField copyrighttext
javax.swing.JTextField lastmodifiedtext
ModuleList listing
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JButton updateButton
javax.swing.JButton selectButton
java.lang.String modulePath
int rowcount
int columncount
java.util.Vector<E> filespecs
java.util.Vector<E> sortmap
java.lang.reflect.Constructor<T> sortprotocnstr
java.lang.String comment
java.util.Vector<E> repositoryListeners
RepositoryStorageTransferAgent transferAgent
java.util.HashMap<K,V> readerMap
javax.swing.JButton setButton
javax.swing.JButton managerButton
javax.swing.JButton helpButton
javax.swing.JButton transferButton
FlatFileSetFrame setframe
FlatFileManagerFrame managerframe
FlatFileToolsHelpFrame helpframe
FlatFileToolTransferFrame transferframe
ReposConfigFrame repositoryEditor
FlatFileConfig Config
FlatFileStorageConnectivity Connection
javax.swing.JTable fileselector
javax.swing.JButton addSources
com.mockturtlesolutions.snifflib.flatfiletools.workbench.FlatFileFrame.FileSourceTableModel sourcemodel
javax.swing.JSpinner preheaderlines
javax.swing.JSpinner postheaderlines
FlatFileStorage backingStorage
TemplateTextArea commentTextArea
javax.swing.JTextField createdOnText
javax.swing.JTextField createdByText
RepositoryConnectionHandler connectionHandler
PrefsConfigFrame prefsEditor
javax.swing.JTextField flatfilesource
javax.swing.JRadioButton isURLButton
RepositoryStorageTransferAgent transferAgent
boolean NoCallbackChangeMode
java.util.Vector<E> reposListeners
javax.swing.JTable formatTable
com.mockturtlesolutions.snifflib.flatfiletools.workbench.FlatFileFrame.FormatTableModel formatmodel
javax.swing.JTextField fieldDelimiter
javax.swing.JTextField recordDelimiter
javax.swing.JFileChooser chooser
javax.swing.JButton preview
javax.swing.JButton addFormatButton
javax.swing.JButton uploadButton
DataSetPanel previewPanel
javax.swing.JSpinner leastcolumn
javax.swing.JSpinner columns2show
javax.swing.JSpinner leastrow
javax.swing.JSpinner rows2show
javax.swing.JButton inferButton
javax.swing.JButton repositoryView
javax.swing.JSpinner repeatFormatNumber
javax.swing.JTextField singleFormatText
javax.swing.JButton removeFormatButton
javax.swing.JButton editPrefsButton
javax.swing.JCheckBox hasHeaderLineBox
javax.swing.JRadioButton enabledRadio
IconifiedDomainNameTextField nicknameText
IconServer iconServer
FlatFilePrefs Prefs
java.util.HashMap<K,V> map
com.mockturtlesolutions.snifflib.flatfiletools.workbench.FlatFileFrame.FormatTableModelListener fmtlistener
ReposConfigFrame repositoryEditor
FlatFileSetConfig SetConfig
FlatFileConfig FileConfig
FlatFileSetConnectivity SetConnection
FlatFileConnectivity FileConnection
javax.swing.JTable fileselector
javax.swing.JButton uploadflatfileButton
javax.swing.JButton addSources
javax.swing.JButton addSourcesFromStorage
javax.swing.JButton addSourcesFromURL
javax.swing.JButton removeSources
com.mockturtlesolutions.snifflib.flatfiletools.workbench.FlatFileSetFrame.FileSourceTableModel sourcemodel
javax.swing.JSpinner preheaderlines
javax.swing.JSpinner postheaderlines
FlatFileSetStorage backingStorage
TemplateTextArea commentTextArea
TemplateTextArea flatfileCommentArea
javax.swing.JTextField createdOnText
javax.swing.JTextField createdByText
RepositoryConnectionHandler FileConnectionHandler
RepositoryConnectionHandler SetConnectionHandler
PrefsConfigFrame prefsEditor
boolean complete_preview
boolean SHOULD_PULL_FLATFILES_FROM_REPOSITORY
int lastselectedsourcerow
javax.swing.JLabel waitIndicator
javax.swing.JButton copyFormatingToSelected
RepositoryStorageTransferAgent transferAgent
boolean NoCallbackChangeMode
java.util.Vector<E> reposListeners
javax.swing.JTable formatTable
com.mockturtlesolutions.snifflib.flatfiletools.workbench.FlatFileSetFrame.FormatTableModel formatmodel
javax.swing.JTextField fieldDelimiter
javax.swing.JTextField recordDelimiter
javax.swing.JFileChooser chooser
javax.swing.JButton preview
javax.swing.JButton addFormatButton
javax.swing.JButton uploadButton
DataSetPanel previewPanel
javax.swing.JSpinner leastcolumn
javax.swing.JSpinner columns2show
javax.swing.JSpinner leastrow
javax.swing.JSpinner rows2show
javax.swing.JButton inferButton
javax.swing.JButton repositoryView
javax.swing.JSpinner repeatFormatNumber
javax.swing.JTextField singleFormatText
javax.swing.JButton removeFormatButton
javax.swing.JButton editPrefsButton
javax.swing.JButton clearButton
javax.swing.JCheckBox hasHeaderLineBox
javax.swing.JRadioButton enabledRadio
javax.swing.JRadioButton flatFileEnabledRadio
IconifiedDomainNameTextField nicknameText
IconifiedDomainNameTextField flatfilenicknameText
IconServer iconServer
FlatFileSetPrefs SetPrefs
FlatFilePrefs FilePrefs
javax.swing.JComboBox<E> sortProtocols
FlatFileSetFindNameDialog findSet
FlatFileFindNameDialog findFile
com.mockturtlesolutions.snifflib.flatfiletools.workbench.FlatFileSetFrame.FormatTableModelListener fmtlistener
java.lang.String name
javax.swing.JTextField nameText
javax.swing.JLabel nameLabel
java.awt.Container contentPane
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
AxesRangeSelection selector
javax.swing.JSpinner jsn
javax.swing.JList<E> datasets
javax.swing.JTextArea aboutBox
DataSet currentDataSet
java.util.Vector<E> editorListeners
boolean editWasCanceled
java.lang.Object priorValue
DataSetSelector selectorPanel
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> okcancelListeners
java.lang.String name
javax.swing.JTextField nameText
javax.swing.JLabel nameLabel
java.awt.Container contentPane
java.awt.event.ActionListener okcancelListener
javax.swing.JButton okButton
javax.swing.JButton cancelButton
SLLine line
int selected
DataSet dataSet
PlotPanel graphicsPanel
javax.swing.JPanel configPanel
javax.swing.JTabbedPane jtb
SelectionList predList
SelectionList respList
SelectionList byVarList
SelectionList subByList
javax.swing.JSpinner calcNumber
javax.swing.JComboBox<E> calcType
javax.swing.JTable calcResultsTable
java.lang.String defaultResultTransform
javax.swing.JTabbedPane rtp
javax.swing.JButton updateButton
java.lang.String tabname
javax.swing.JSpinner derivValue
javax.swing.JSpinner lineNoise
javax.swing.JSpinner smoothValue
javax.swing.JSpinner nPoints
javax.swing.JSpinner nMin
javax.swing.JSpinner nMax
javax.swing.JComboBox<E> smoothMethod
MatrixBuilder matrixBuilder
javax.swing.JRadioButton nPointsLabel
javax.swing.JRadioButton specPointsLabel
NormalDistribution normal
javax.swing.JSpinner polyOrder
javax.swing.JTextField minimaText
javax.swing.JTextField maximaText
javax.swing.JTextField inverseYPoint
javax.swing.JTextField inverseXPoint
DblMatrix[] X
DblMatrix Y
javax.swing.JTextField lowerXBound
javax.swing.JTextField upperXBound
javax.swing.JComboBox<E> transformResult
javax.swing.JList<E> models
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> okcancelListeners
javax.swing.JTextArea aboutBox
StatisticalModel currentModel
java.util.Vector<E> editorListeners
boolean editWasCanceled
java.lang.Object priorValue
ModelSelector selectorPanel
java.lang.String name
javax.swing.JTextField nameText
javax.swing.JLabel nameLabel
java.awt.Container contentPane
java.awt.event.ActionListener okcancelListener
javax.swing.JButton okButton
javax.swing.JButton cancelButton
PlotPanel mainPane
DataSet dataSet
javax.swing.JPanel dataPane
SLFigure plotFigure
javax.swing.JButton printButton
javax.swing.JButton exportFigureButton
javax.swing.JButton exportDataButton
AnnotationSelectionListener selectListener
javax.swing.JTable atable
Plot plot
SLAxes plotAxes
ImageFileChooser chooser
SLFigurePreferences figurePreferences
SLAxesPreferences axesPreferences
SLLineSegmentRendererPreferences lineSegmentRendererPreferences
SelectionList varList
SelectionList predList
SelectionList respList
SelectionList byVarList
SelectionList subByList
PrintJobFrame printJobFrame
java.lang.String text
DblMatrix xCoord
DblMatrix yCoord
DblMatrix zCoord
SLComponent parent
java.awt.Font textFont
int textOrientation
java.util.ArrayList<E> children
java.awt.Color fontColor
boolean directPixels
AnnotationRenderer annotationRenderer
DblMatrix directionReferencePoint
int truncatePoint
java.lang.String fontFamily
int fontStyle
int fontSize
SLLocator locator
boolean isSilent
int level_count
boolean DO_NOT_NOTIFY
java.util.ArrayList<E> children
SLFigure parent
DblMatrix xTick
DblMatrix yTick
DblMatrix zTick
DblMatrix xGrid
DblMatrix yGrid
DblMatrix zGrid
float lineThickness
java.awt.Color backgroundColor
java.awt.Color titleColor
java.awt.Color axesColor
java.awt.Color xLabelColor
java.awt.Color yLabelColor
java.awt.Color zLabelColor
java.lang.String xLabel
java.lang.String yLabel
java.lang.String zLabel
java.lang.String title
java.lang.String[] xTickLabel
java.lang.String[] yTickLabel
java.lang.String[] zTickLabel
boolean boxOn
DblMatrix XLim
DblMatrix YLim
DblMatrix ZLim
DblMatrix extentX
DblMatrix extentY
DblMatrix extentZ
double leftMargin
double rightMargin
double topMargin
double bottomMargin
java.awt.Font xLabelFont
java.awt.Font yLabelFont
java.awt.Font zLabelFont
java.awt.Font axesFont
java.awt.Font titleFont
java.awt.Graphics thisGraphics
boolean gridOn
boolean axesOn
java.util.Vector<E> listeners
int XAxesStrategy
int YAxesStrategy
int ZAxesStrategy
int axesOrientation
int axesGridMethod
int axesTickMethod
int axesTickLabelMethod
int hideZAxis
int hideXAxis
int hideYAxis
DblMatrix axisHideThreshold
SLCamera camera
SLCameraControllerPanel camPanel
SLCamera camera
int mouse_sensitvity
javax.swing.JButton cancelButton
javax.swing.JButton okButton
javax.swing.JButton applyButton
javax.swing.JButton snapPictureButton
javax.swing.JRadioButton recordMovieButton
javax.swing.JButton fittoviewButton
javax.swing.JComboBox<E> perspectiveTypeButton
ZoomDialog otherZoomDialog
DblMatrix zoomValue
DblMatrix prev_zoomValue
int currentThetaDegrees
int currentPhiDegrees
int currentPsiDegrees
DblMatrix[] currentCameraBasis
DblMatrix currentCameraPosition
javax.swing.JSpinner xtether
javax.swing.JSpinner ytether
javax.swing.JSpinner ztether
javax.swing.JSpinner panphi
javax.swing.JSpinner pantheta
javax.swing.JSpinner panrho
javax.swing.JTextField nameText
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
java.util.Vector<E> applyListeners
javax.swing.JButton zoomOptionsButton
javax.swing.JPopupMenu zoomOptionsMenu
javax.swing.JPopupMenu referencePointOptionsMenu
boolean silentModification
javax.swing.JRadioButton continuousApply
javax.swing.JButton fwdButton
javax.swing.JButton bwdButton
javax.swing.JButton leftButton
javax.swing.JButton rightButton
javax.swing.JButton upButton
javax.swing.JButton downButton
javax.swing.JComboBox<E> viewButton
javax.swing.JButton lookAtButton
javax.swing.JButton referenceButton
javax.swing.JTextField thetaText
javax.swing.JTextField phiText
javax.swing.JTextField psiText
javax.swing.JTextField Xcoord
javax.swing.JTextField Ycoord
javax.swing.JTextField Zcoord
javax.swing.JTextField Xdir
javax.swing.JTextField Ydir
javax.swing.JTextField Zdir
javax.swing.JSlider phiSlider
javax.swing.JSlider thetaSlider
javax.swing.JSlider psiSlider
java.util.HashMap<K,V> zoomMenuItemMap
java.util.HashMap<K,V> referenceMenuItemMap
java.text.DecimalFormat number
javax.swing.JRadioButton applyContinuously
ImageFileChooser chooser
java.util.ArrayList<E> children
SLLocator locator
SLComponent parent
java.util.Vector<E> polyRegions
boolean pixelsDirect
boolean isSilent
GriddedRegion griddedRegion
GridElementMapping faceValueMapping
GridElementMapping edgeValueMapping
GridElementAnnotator annotator
GridElementPainter facePainter
ColorMapper faceColorMapper
ColorMapper edgeColorMapper
boolean autoscale
java.awt.Color backgroundColor
java.awt.Color edgeColor
java.awt.Color fontColor
DomainNameFilter legendDomainNameFilter
SLAxes parent
int truncationPoint
boolean doTruncate
DblMatrix xData
DblMatrix yData
DblMatrix zData
DblMatrix width
DblMatrix height
double symbol_width
java.awt.Font textFont
java.lang.String fontFamily
int fontStyle
int fontSize
int legend_cols
java.util.HashMap<K,V> annotationMap
java.util.HashMap<K,V> symbolMap
java.util.Map<K,V> lineMap
int orderMode
int legendLocale
SLLine borderLine
java.util.ArrayList<E> children
SLLocator locator
java.awt.Color backgroundColor
java.util.ArrayList<E> children
SLComponent parent
SLLocator locator
boolean pixelsDirect
DblMatrix xData
DblMatrix yData
DblMatrix zData
java.lang.String marker
int lineWidth
SLMarkerRenderer markerRenderer
SLLineSegmentRenderer lineSegmentRenderer
DblMatrix lineDash
boolean isDotted
int colorBy
boolean isSilent
java.util.ArrayList<E> children
SLLocator locator
SLComponent parent
DblMatrix xData
DblMatrix yData
DblMatrix zData
boolean pixelsDirect
boolean isSilent
SLPaint mypaint
java.awt.Color myfacecolor
java.awt.Color myedgecolor
int myedgewidth
java.util.ArrayList<E> children
SLComponent parent
java.awt.Graphics graphics
DblMatrix xData
DblMatrix yData
DblMatrix zData
SLLocator locator
boolean isSilent
java.awt.Color surfaceColor
ColorMapper surfaceColorMapper
int colorBy
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JSpinner zoomNum
javax.swing.JSpinner zoomDenom
javax.swing.JTextField percentageDirect
GroovyScriptBrowserPanel.ScriptNamesTable scriptNamesTable
javax.swing.JTextArea summaryArea
javax.swing.JComboBox<E> categoryBox
java.util.Vector<E> summaries
javax.swing.JButton runButton
javax.swing.JButton selectButton
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JButton newButton
javax.swing.JButton copyButton
javax.swing.JButton editButton
GroovyScriptConnectivity conn
GroovyScriptQuery finder
Binding binding
javax.swing.JComboBox<E> reposSelect
RepositoryConnectionHandler hand
javax.swing.JToolBar topMenuBar
int dialog_type
GroovyScriptPrefs Prefs
IconServer iconServer
java.util.Vector<E> runListeners
java.util.Vector<E> selectListeners
GroovyScriptSummary selectedScript
GroovyScriptPanel panel
java.util.Vector<E> reposListeners
javax.swing.JButton repositoryView
GroovyScriptConfig Config
GroovyScriptConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
GroovyScriptPrefs Prefs
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
RepositoryStorageTransferAgent transferAgent
DefaultMultiConfigNameSelectorGroup storageGroup
javax.swing.JRadioButton enabledRadio
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
javax.swing.JButton editPrefsButton
TemplateTextArea commentTextArea
javax.swing.JTextField shortDescriptionTextField
javax.swing.JComboBox<E> categoryText
TemplateTextArea groovyScriptTextArea
javax.swing.JButton uploadButton
GroovyScriptStorage backingStorage
javax.swing.JButton cancelButton
javax.swing.JButton helpButton
javax.swing.JTextField valueText
javax.swing.JComboBox<E> unitsSelector
java.lang.String[] units
java.lang.String currentUnits
java.lang.Double currentValue
java.text.DecimalFormat number
java.text.DecimalFormat stdnumber
java.util.Vector<E> unitsListeners
java.util.Vector<E> valueListeners
javax.swing.JTextField domainText
javax.swing.JTextField pathText
javax.swing.JButton iconField
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
DomainNameNode node
ImageFileChooser chooser
javax.swing.JTree tree
DomainNameTree iconTree
java.lang.String selectedName
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JButton editButton
javax.swing.JButton addButton
javax.swing.JButton removeButton
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
DomainNameNodeEditor domainNodeEditor
javax.swing.JScrollPane jsp
int edit_option
javax.swing.tree.DefaultTreeModel treeModel
java.util.Vector<E> modificationListeners
ExceptionHandler exceptionHandler
FontChooserPanel fontChooser
javax.swing.JComboBox<E> fontName
javax.swing.JCheckBox fontBold
javax.swing.JCheckBox fontItalic
javax.swing.JTextField fontSize
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JLabel previewLabel
java.awt.Font newFont
IconifiedDomainNameTextField nameText
IconifiedDomainNameTextField nameText
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
boolean stillrunning
java.lang.String acceptedText
javax.swing.JTextField nameText
javax.swing.JButton domainButton
IconServer iconServer
DomainSelector userSelector
java.util.Vector<E> domainNameListeners
boolean listeningOn
int buttonHeight
boolean modified
PrintJobPanel printPanel
java.util.Vector<E> cancel_listeners
java.util.Vector<E> ok_listeners
DefaultPrintJobPrefs Prefs
javax.swing.JTextField printExec
javax.swing.JTextField printOptions
javax.swing.JTextField printFile
javax.swing.JComboBox<E> reposSelect
javax.swing.JButton cancelButton
javax.swing.JButton okButton
javax.swing.JTextField jobName
javax.swing.JTextField jobAuthor
javax.swing.JTextField jobDate
javax.swing.JTextField jobFilename
javax.swing.JTextField valueText
javax.swing.JComboBox<E> unitsSelector
java.lang.String[] units
java.lang.String currentUnits
java.lang.Double currentValue
java.text.DecimalFormat number
java.text.DecimalFormat stdnumber
java.util.Vector<E> unitsListeners
java.util.Vector<E> valueListeners
java.lang.String name
javax.swing.JTextField nameText
javax.swing.JLabel nameLabel
java.awt.Container contentPane
java.awt.event.ActionListener okcancelListener
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> okcancelListeners
java.awt.Container contentPane
StatisticalModel model
javax.swing.JComboBox<E> methodSelector
javax.swing.JButton goButton
javax.swing.JScrollPane calibJSP
java.util.LinkedHashMap<K,V> methodMap
CalibrationPanel calibrationPanel
StatisticalModel model
javax.swing.JPanel parameterValuePanel
javax.swing.JScrollPane parameterValueScroll
javax.swing.JPanel editorBox
javax.swing.Box controlBox
javax.swing.Box mainBox
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.HashMap<K,V> editorMap
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JTable table
javax.swing.table.DefaultTableModel model
DblParamSet paramSet
boolean alphaSorted
DblParamSetEditor ed
DblParamSet SumOfParameters
StatisticalModel model
ParameterValueEditor valueEditor
javax.swing.CellEditor currentEditor
java.awt.event.MouseEvent lastEditingMouseEvent
javax.swing.JTree tree
HierarchicalParameters root
javax.swing.JTree hierarchytree
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> cancelListeners
java.util.Vector<E> okListeners
java.awt.Container contentPane
java.util.Vector<E> listeners
DblMatrix pvalue
GaussianProposalPanel panel
DefaultMultiConfigNameSelectorGroup previousParams
DefaultMultiConfigNameSelectorGroup candidateParams
DefaultMultiConfigNameSelectorGroup mixingParams
RepositoryStorageTransferAgent transferAgent
java.util.Vector<E> reposListeners
javax.swing.JButton repositoryView
javax.swing.JButton uploadButton
javax.swing.JButton editPrefsButton
boolean NoCallbackChangeMode
IconServer iconServer
javax.swing.JRadioButton enabledRadio
PrefsConfigFrame prefsEditor
ReposConfigFrame repositoryEditor
RepositoryConnectionHandler connectionHandler
ProposalDistributionConnectivity Connection
ProposalDistributionPrefs Prefs
ProposalDistributionConfig Config
IconifiedDomainNameTextField nicknameText
javax.swing.JTable paramTable
GaussianProposalStorage backingStorage
ProposalDistributionFindNameDialog findProp
TemplateTextArea commentText
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
javax.swing.JButton setButton
javax.swing.JButton managerButton
javax.swing.JButton mcmctraceButton
javax.swing.JButton helpButton
javax.swing.JButton transferButton
javax.swing.JButton glmBuilderButton
javax.swing.JButton parameterSetButton
GLMStorageFrame modelBuilderFrame
ParameterSetFrame parameterSetFrame
MCMCTraceFrame traceframe
MCMCFrame setframe
MCMCToolsHelpFrame helpframe
MCMCToolsTransferFrame transferframe
MCMCConfig Config
MCMCStorageConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
MCMCPrefs Prefs
MCMCFindNameDialog findMCMC
boolean NoCallbackChangeMode
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
ReposConfigFrame repositoryEditor
MCMCRunDOM previouslySelectedDom
DefaultMultiConfigNameSelectorGroup likeGroup
DefaultMultiConfigNameSelectorGroup priorGroup
boolean PREVENT_CALLBACKS
MCMCRunPanel runPanel
StatisticalModelConfig statLikeConfig
StatisticalModelConfig statPriorConfig
ReposConfigFrame statLikeReposEditor
ReposConfigFrame statPriorReposEditor
java.util.Vector<E> reposListeners
javax.swing.JRadioButton enabledRadio
javax.swing.JButton editPrefsButton
javax.swing.JButton uploadButton
javax.swing.JButton repositoryView
javax.swing.JButton activateMCMCRunsButton
javax.swing.JButton statLikeEditModel
javax.swing.JButton statPriorEditModel
DefaultMultiConfigNameSelectorGroup psetGroup
javax.swing.JComboBox<E> psetconfig
javax.swing.JButton psetrepos
IconifiedDomainNameTextField psetname
javax.swing.JButton psetEditButton
javax.swing.JComboBox<E> statLikeConfigSelect
javax.swing.JButton statLikeReposView
IconifiedDomainNameTextField statLikeNicknameText
javax.swing.JComboBox<E> statPriorConfigSelect
javax.swing.JButton statPriorReposView
IconifiedDomainNameTextField statPriorNicknameText
TemplateTextArea commentTextArea
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
RepositoryStorageTransferAgent transferAgent
MCMCStorage backingStorage
javax.swing.JTable assocMCMCRuns
javax.swing.JButton addMCMCRunButton
javax.swing.JButton removeMCMCRunButton
javax.swing.JButton duplicateMCMCRunButton
javax.swing.JSpinner duplicateMCMCRunTimes
MCMCRunPanel runPanel
MCMCRunState runstate
javax.swing.JComboBox<E> runStateText
javax.swing.JComboBox<E> mcmcStorageConfigSelector
javax.swing.JButton mcmcStorageRepositorySelector
IconifiedDomainNameTextField mcmcStorageNicknameSelector
javax.swing.JButton editMCMCStorage
MCMCStorageConnectivity Connection
javax.swing.JButton repositoryView
javax.swing.JButton uploadButton
RepositoryConnectionHandler connectionHandler
javax.swing.JRadioButton isStillRunningRadio
javax.swing.JRadioButton isStateLockedRadio
javax.swing.JRadioButton shouldHaltRadio
javax.swing.JRadioButton shouldRollBackRadio
javax.swing.JRadioButton recordParameterTraceRadio
javax.swing.JRadioButton recordObjectTraceRadio
javax.swing.JRadioButton assertSymmetricProposalRadio
javax.swing.JRadioButton assertFlatPriorRadio
javax.swing.JSpinner currentIterationText
javax.swing.JSpinner currentLinkCountText
javax.swing.JSpinner rejectCountText
javax.swing.JSpinner acceptCountText
javax.swing.JSpinner maximumIterationNumberText
javax.swing.JTextField mcmcRunIdentifierText
javax.swing.JSpinner currentParameterBlockIndex
javax.swing.JTextField currentAlpha
TemplateTextArea commentText
MCMCFindNameDialog findMCMC
IconServer iconServer
javax.swing.JTabbedPane tabsPane
javax.swing.JPanel stateTab
javax.swing.JPanel blocksTab
javax.swing.JPanel bayesTab
javax.swing.JPanel linksTab
javax.swing.JPanel traceTab
javax.swing.JComboBox<E> ALIKEConfigSelect
javax.swing.JButton ALIKEReposView
IconifiedDomainNameTextField ALIKENicknameText
javax.swing.JButton ALIKEEditButton
javax.swing.JComboBox<E> BLIKEConfigSelect
javax.swing.JButton BLIKEReposView
IconifiedDomainNameTextField BLIKENicknameText
javax.swing.JButton BLIKEEditButton
javax.swing.JComboBox<E> APRIORConfigSelect
javax.swing.JButton APRIORReposView
IconifiedDomainNameTextField APRIORNicknameText
javax.swing.JButton APRIOREditButton
javax.swing.JComboBox<E> BPRIORConfigSelect
javax.swing.JButton BPRIORReposView
IconifiedDomainNameTextField BPRIORNicknameText
javax.swing.JButton BPRIOREditButton
javax.swing.JComboBox<E> APROPConfigSelect
javax.swing.JButton APROPReposView
IconifiedDomainNameTextField APROPNicknameText
javax.swing.JButton APROPEditButton
javax.swing.JComboBox<E> BPROPConfigSelect
javax.swing.JButton BPROPReposView
IconifiedDomainNameTextField BPROPNicknameText
javax.swing.JButton BPROPEditButton
javax.swing.JComboBox<E> previousParamsConfigSelect
javax.swing.JButton previousParamsReposView
IconifiedDomainNameTextField previousParamsNicknameText
javax.swing.JButton previousParamsEditButton
javax.swing.JComboBox<E> candidateParamsConfigSelect
javax.swing.JButton candidateParamsReposView
IconifiedDomainNameTextField candidateParamsNicknameText
javax.swing.JButton candidateParamsEditButton
javax.swing.JComboBox<E> referenceParamsConfigSelect
javax.swing.JButton referenceParamsReposView
IconifiedDomainNameTextField referenceParamsNicknameText
javax.swing.JButton referenceParamsEditButton
javax.swing.JComboBox<E> previousObjectConfigSelect
javax.swing.JButton previousObjectReposView
IconifiedDomainNameTextField previousObjectNicknameText
javax.swing.JButton previousObjectEditButton
javax.swing.JComboBox<E> candidateObjectConfigSelect
javax.swing.JButton candidateObjectReposView
IconifiedDomainNameTextField candidateObjectNicknameText
javax.swing.JButton candidateObjectEditButton
javax.swing.JComboBox<E> referenceObjectConfigSelect
javax.swing.JButton referenceObjectReposView
IconifiedDomainNameTextField referenceObjectNicknameText
javax.swing.JButton referenceObjectEditButton
javax.swing.JComboBox<E> objTraceConfigSelect
javax.swing.JButton objTraceReposView
IconifiedDomainNameTextField objTraceNicknameText
javax.swing.JButton objTraceEditButton
javax.swing.JComboBox<E> paramTraceConfigSelect
javax.swing.JButton paramTraceReposView
IconifiedDomainNameTextField paramTraceNicknameText
javax.swing.JButton paramTraceEditButton
javax.swing.JComboBox<E> parentMCMCConfigSelect
javax.swing.JButton parentMCMCReposView
IconifiedDomainNameTextField parentMCMCNicknameText
javax.swing.JButton parentMCMCEditButton
DefaultMultiConfigNameSelectorGroup ALIKEGroup
DefaultMultiConfigNameSelectorGroup BLIKEGroup
DefaultMultiConfigNameSelectorGroup APROPGroup
DefaultMultiConfigNameSelectorGroup BPROPGroup
DefaultMultiConfigNameSelectorGroup APRIORGroup
DefaultMultiConfigNameSelectorGroup BPRIORGroup
DefaultMultiConfigNameSelectorGroup previousParamsGroup
DefaultMultiConfigNameSelectorGroup candidateParamsGroup
DefaultMultiConfigNameSelectorGroup referenceParamsGroup
DefaultMultiConfigNameSelectorGroup previousObjectGroup
DefaultMultiConfigNameSelectorGroup candidateObjectGroup
DefaultMultiConfigNameSelectorGroup referenceObjectGroup
DefaultMultiConfigNameSelectorGroup objTraceGroup
DefaultMultiConfigNameSelectorGroup paramTraceGroup
DefaultMultiConfigNameSelectorGroup parentMCMCGroup
javax.swing.JButton addBlockButton
javax.swing.JButton removeBlockButton
javax.swing.JRadioButton enabledRadio
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
IconifiedDomainNameTextField nicknameText
MCMCRunTransferAgent transferAgent
java.util.Vector<E> reposListeners
MCMCPrefs Prefs
MCMCConfig Config
javax.swing.JTable blockTable
javax.swing.JTable blockParametersTable
javax.swing.JTextField blockparamsSearchTerm
javax.swing.JButton blockparamsSearchButton
javax.swing.JButton blockparamsActiveButton
javax.swing.JButton updateFromReposButton
javax.swing.JButton blockparamsInactiveButton
java.util.Vector<E> parameterBlocks
MCMCStorage privateMCMCStorage
DefaultMultiConfigNameSelectorGroup propGroup
javax.swing.JComboBox<E> propConfigSelect
javax.swing.JButton propReposView
IconifiedDomainNameTextField propNicknameText
javax.swing.JButton propEditModel
java.lang.String name
javax.swing.JTextField nameText
javax.swing.JLabel nameLabel
java.awt.Container contentPane
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> reposListeners
javax.swing.JButton repositoryView
MCMCTraceConfig Config
MCMCTraceConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
DataSet theTraceData
PlotFrame theTracepframe
Plot theTraceplotobj
MCMCPrefs Prefs
int OPEN_COPY_THREADS
long TIME_SPENT_COPYING
long startMillis
ParameterSetFrame traceElementBrowser
javax.swing.JProgressBar progressBar
boolean NoCallbackChangeMode
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
RepositoryStorageTransferAgent transferAgent
javax.swing.JTable mcmcTraceTable
DefaultMultiConfigNameSelectorGroup storageGroup
javax.swing.JRadioButton enabledRadio
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
javax.swing.JButton editPrefsButton
TemplateTextArea commentTextArea
javax.swing.JButton uploadButton
MCMCTraceStorage backingStorage
javax.swing.JButton refreshButton
javax.swing.JRadioButton refreshPeriodic
javax.swing.JButton addButton
javax.swing.JButton visButton
javax.swing.JButton paramViewButton
javax.swing.JButton removeButton
javax.swing.JButton duplicateButton
javax.swing.JSpinner duplicateSpinner
javax.swing.JSpinner startingTraceViewIndex
javax.swing.JSpinner endingTraceViewIndex
WedgePanel panel
java.lang.String name
javax.swing.JTextField nameText
javax.swing.JLabel nameLabel
java.awt.Container contentPane
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> reposListeners
javax.swing.JButton repositoryView
WedgeConfig Config
WedgeConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
WedgePrefs Prefs
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
RepositoryStorageTransferAgent transferAgent
DefaultMultiConfigNameSelectorGroup storageGroup
javax.swing.JRadioButton enabledRadio
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
javax.swing.JButton editPrefsButton
TemplateTextArea commentTextArea
WedgeStorage backingStorage
WedgeHelpFrame helpframe
javax.swing.JButton uploadButton
javax.swing.JTextField initialScript
javax.swing.JTextField likelihoodScript
javax.swing.JTextField priorScript
boolean shouldContinue
javax.swing.JButton pauseButton
javax.swing.JButton continueButton
javax.swing.JButton helpButton
javax.swing.JButton editInitScriptButton
javax.swing.JButton editLikeScriptButton
javax.swing.JButton editPriorScriptButton
javax.swing.JButton editMCMCRunButton
javax.swing.JButton initializerScriptButton
DefaultMultiConfigNameSelectorGroup initializerScriptGroup
IconifiedDomainNameTextField initializerScriptNicknameText
javax.swing.JButton likelihoodScriptButton
DefaultMultiConfigNameSelectorGroup likelihoodScriptGroup
IconifiedDomainNameTextField likelihoodScriptNicknameText
javax.swing.JButton priorScriptButton
DefaultMultiConfigNameSelectorGroup priorScriptGroup
IconifiedDomainNameTextField priorScriptNicknameText
javax.swing.JButton mcmcRunButton
DefaultMultiConfigNameSelectorGroup mcmcRunGroup
IconifiedDomainNameTextField mcmcRunNicknameText
RepositoryConnectivity Connection
ReposConfig Config
java.lang.String PreferenceSet
java.lang.String Pref
java.lang.String UpdateString
TextUpdate UpdateObject
boolean TrackRecents
int NumberOfRecents
java.util.LinkedHashSet<E> alwaysShown
java.util.Vector<E> selectionListeners
javax.swing.Icon openIcon
javax.swing.Icon closedIcon
javax.swing.Icon leafIcon
IconServer iconServer
ReposConfig Config
java.util.HashMap<K,V> componentConfigs
javax.swing.JComboBox<E> List
java.lang.String currentRepository
java.util.Vector<E> selectListener
java.util.Vector<E> closeListener
java.util.Vector<E> saveListener
java.lang.String repositoryLabelText
javax.swing.JLabel repositoryLabel
java.util.HashSet<E> colorConfigs
java.util.HashSet<E> domainNameFilterConfigs
java.util.HashSet<E> integerConfigs
java.util.HashSet<E> fontConfigs
java.util.HashSet<E> trueFalseConfigs
java.util.HashSet<E> yesNoConfigs
java.util.HashSet<E> onOffConfigs
java.util.HashSet<E> fileChooserConfigs
java.util.HashSet<E> directoryChooserConfigs
java.util.HashSet<E> buttonTextConfigs
FontChooser fontChooser
javax.swing.JButton currentFontConfig
java.util.HashMap<K,V> customListeners
javax.swing.JButton selectButton
javax.swing.JButton saveButton
javax.swing.JButton closeButton
boolean SETTINGS_MODIFIED
ReposConfigEditor reposEd
java.lang.String onlyThisRepository
java.lang.Class<T> searchClass
ReposConfig config
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
IconServer iconServer
RepositoryStorageNameQuery query
NameQueryTree nameTree
javax.swing.JRadioButton enabledRadio
javax.swing.JRadioButton classRadio
javax.swing.JTextField nicknameQuery
javax.swing.JTextField createdByQuery
javax.swing.JTextField createdOnQuery
javax.swing.JTextField commentQuery
javax.swing.JButton searchButton
javax.swing.JButton cancelButton
javax.swing.JButton okButton
NameQueryNode[] selectedNameQueryNodes
javax.swing.tree.DefaultTreeModel resultsTreeModel
javax.swing.JTree queryTree
int maxSelections
int minSelections
javax.swing.JProgressBar progressBar
javax.swing.JPopupMenu selectionPopup
RepositoryConnectionHandler connectionHandler
RepositoryStorage storage
DefaultMultiConfigNameSelectorGroup storageGroup
javax.swing.JButton reposView
IconifiedDomainNameTextField nicknameText
TemplateTextArea commentText
ReposPrefs Prefs
ReposConfig config
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JRadioButton enabledRadio
javax.swing.JTextField createdBy
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
java.util.Vector<E> cancelListeners
java.util.Vector<E> okListeners
java.util.Vector<E> reposListeners
DefaultMultiConfigNameSelectorGroup group
javax.swing.JComboBox<E> configSelector
javax.swing.JComboBox<E> storageTypes
javax.swing.JComboBox<E> DOMTypes
javax.swing.JComboBox<E> SQLTypes
javax.swing.JButton repositoryView
IconifiedDomainNameTextField nicknameText
javax.swing.JButton exportPrototype
javax.swing.JButton exportAllPrototypes
java.lang.String[] allDOMS
java.lang.String[] allSQLS
javax.swing.JButton exportSQLPrototype
javax.swing.JButton exportAllSQLPrototypes
javax.swing.JButton srcRepos
javax.swing.JButton storageClean
java.awt.Container contentPane
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
ReposConfigFrame srcEditor
ReposConfigFrame destEditor
RepositoryFindNameDialog storageFind
ReposConfig Config
RepositoryConnectivity Connection
RepositoryPrefs Prefs
IconServer iconServer
java.util.Vector<E> selectedStorage
javax.swing.JComboBox<E> storageClassSelector
java.util.HashMap<K,V> displayNameMap
javax.swing.JButton srcRepos
javax.swing.JButton storageClean
java.awt.Container contentPane
java.awt.event.ActionListener okcancelListener
javax.swing.JButton okButton
javax.swing.JButton cancelButton
ReposConfigFrame srcEditor
ReposConfigFrame destEditor
RepositoryFindNameDialog nameFind
ReposConfig Config
RepositoryConnectivity Connection
IconServer iconServer
java.util.Vector<E> selectedStorage
javax.swing.JButton srcRepos
javax.swing.JButton destRepos
javax.swing.JButton nameSearch
java.awt.Container contentPane
java.awt.event.ActionListener okcancelListener
javax.swing.JButton okButton
javax.swing.JButton closeButton
javax.swing.JButton cancelButton
ReposConfigFrame srcEditor
ReposConfigFrame destEditor
RepositoryFindNameDialog nameFind
RepositoryConnectionHandler connectionHandler
ReposConfig Config
RepositoryConnectivity Connection
IconServer iconServer
javax.swing.JProgressBar progressBar
java.lang.Object lock
boolean shouldStop
java.lang.Thread transferThread
java.awt.Color emptyColor
java.awt.Color loadedColor
javax.swing.JButton clearnameSearch
javax.swing.JLabel queueIndicator
javax.swing.JComboBox<E> transSelect
java.util.HashMap<K,V> selectionQueue
java.util.HashMap<K,V> displayNameMap
java.util.Vector<E> reposListeners
WordStorageConfig Config
WordStorageConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
WordStoragePrefs Prefs
WordFindNameDialog findWord
boolean NoCallbackChangeMode
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
ReposConfigFrame repositoryEditor
javax.swing.JRadioButton enabledRadio
javax.swing.JButton editPrefsButton
javax.swing.JButton uploadButton
javax.swing.JButton repositoryView
TemplateTextArea commentTextArea
javax.swing.JTextField createdOnText
javax.swing.JTextField createdByText
RepositoryStorageTransferAgent transferAgent
WordStorage backingStorage
java.util.Vector<E> listeners
javax.swing.undo.UndoManager undoManager
DefaultSpreadsheetEntry entry
int rowOfEntry
int colOfEntry
boolean enterKeyedIn
java.lang.String priorValue
java.lang.String priorFunction
DefaultSpreadsheetTable currentTable
SpreadsheetEntryMatrix backingMatrix
DefaultSpreadsheetPanel parentPanel
DefaultSpreadsheetTable parentTable
boolean isQuiet
RepositoryHeaderFrame saveFrame
MyrtleTransferAgent transferAgent
boolean interactive
SpreadsheetUndoRedoManager undoRedoManager
boolean SAVED_PREVIOUSLY
DefaultSpreadsheetPanel.SheetDescriptionTextFrame sheetDescriptionText
DefaultSpreadsheetPanel.RegisterLinksTextFrame linksRegisterText
java.lang.String currentPrefs
ImageFileChooser imageChooser
int persistent_sheet_counter
PrintJobFrame printJobFrame
javax.swing.JPopupMenu imagePopupMenu
java.awt.Font underlineFont
java.awt.Font normalFont
java.awt.Font underlineFontBold
java.awt.Font normalFontBold
javax.swing.JToolBar mainToolBar
javax.swing.JToolBar grabToolBar
javax.swing.JToolBar procToolBar
java.util.LinkedHashMap<K,V> selectionBookmarks
DefaultSpreadsheetPanel.SubsetMarksCategoryModel catsmod
javax.swing.JPopupMenu helpMenu
java.util.Vector<E> procs
DefaultSpreadsheetPanel.SetOperationFrame setOperationFrame
DefaultSpreadsheetPanel.ManageSelectionBookmarksFrame manageBookmarksFrame
DefaultSpreadsheetPanel.NewBookmarkEntryFrame newBookmarkFrame
DefaultSpreadsheetPanel.FillSelectionFrame fillSelectionFrame
DefaultSpreadsheetPanel.SortRangeFrame sortRangeFrame
javax.swing.JButton addBookmarkEntryButton
javax.swing.JButton newProc
javax.swing.JButton updateProc
javax.swing.JButton deleteProc
javax.swing.JPanel procList
javax.swing.JPanel procPanel
javax.swing.JPanel goodiesPanel
javax.swing.JPanel imageList
javax.swing.JPanel imageStackPanel
java.util.HashSet<E> selectedScripts
java.util.HashSet<E> selectedImages
java.util.Vector<E> printFormatList
java.util.Vector<E> printProcFormatList
ReservedFunctionLibrary allfuns
javax.swing.JScrollPane procScrollPane
javax.swing.JScrollPane imageStackScrollPane
javax.swing.JButton transposeButton
javax.swing.JButton newsheetButton
javax.swing.JButton groovyLibraryButton
javax.swing.JButton reservedFunctionLibraryButton
javax.swing.JLabel rangeGrabButton
javax.swing.JLabel rangeBookmarkButton
javax.swing.JTabbedPane sheetsTabbedPane
DefaultSpreadsheetTable table
SharedSpreadsheetClipboard clipboard
javax.swing.JPopupMenu sheetPopupMenu
javax.swing.JPopupMenu printProc
javax.swing.JPopupMenu procPopupMenu
java.util.Vector<E> spreadsheetpanellisteners
java.util.Vector<E> rangeGrabListeners
GroovyScriptBrowserPanel gp
GroovyScriptBrowserPanel gpsalon
javax.swing.JFrame gpframe
javax.swing.JFrame gpsalonframe
javax.swing.JSplitPane splitPane
javax.swing.ImageIcon defaultProcIcon
javax.swing.ImageIcon defaultBrokenIcon
ReservedFunctionBrowserFrame builtinframe
java.awt.Color altRowColor
DefaultSpreadsheetHelpFrame helpFrame
MyrtleConfig config
MyrtlePrefs prefs
MyrtleFindNameDialog projectFindNameDialog
RepositoryConnectionHandler connectionHandler
MyrtleConnectivity Connection
PrefsConfigFrame prefsEditor
NormalDistribution normDist
FDistribution fDist
ChiSqDistribution chi2Dist
TDistribution tDist
BinomialDistribution binoDist
GammaDistribution gamDist
HypergeometricDistribution hygeDist
UniformDistribution uDist
BernoulliDistribution bernoulliDist
DiscreteUniformDistribution unidDist
PoissonDistribution poissDist
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JTextField startValue
javax.swing.JTextField stopValue
SpreadsheetEntryMatrix mat
java.lang.String range
java.util.Vector<E> okListeners
java.util.Vector<E> goToListeners
javax.swing.JButton okButton
javax.swing.JButton goToButton
javax.swing.JTable subsetMarksTable
javax.swing.JList<E> allCategoriesList
javax.swing.JPopupMenu catsPopupMenu
javax.swing.JPopupMenu marksPopupMenu
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JTextField nameText
javax.swing.JComboBox<E> categorySelect
java.lang.String range
java.util.Vector<E> okListeners
DefaultSpreadsheetPanel.LinksTextArea textArea
javax.swing.JButton okButton
boolean scriptSelected
java.lang.String scriptText
java.util.Vector<E> scriptListeners
boolean still_running
javax.swing.ImageIcon waitIcon1
javax.swing.ImageIcon waitIcon2
javax.swing.ImageIcon waitIcon3
javax.swing.ImageIcon waitIcon4
javax.swing.ImageIcon modifiedIcon
javax.swing.ImageIcon OkIcon
Script script
int WAIT_DELAY
boolean run_aborted
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
java.util.Vector<E> saveListeners
javax.swing.JToolBar toolbar
javax.swing.JButton okButton
javax.swing.JButton searchButton
javax.swing.JPopupMenu searchMenu
javax.swing.JButton printButton
javax.swing.JLabel scriptRangeBookmarkButton
javax.swing.JButton cancelButton
javax.swing.JButton saveButton
DefaultSpreadsheetPanel.ScriptButton script
TemplateTextArea groovyScriptTextArea
javax.swing.JLabel scriptRangeGrabButton
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JTextField AText
javax.swing.JTextField BText
javax.swing.JTextField DestText
javax.swing.JToolBar toolbar
javax.swing.JComboBox<E> operationSelect
javax.swing.JLabel rangeBookmarkButton
javax.swing.JLabel rangeGrabButton
java.util.Vector<E> okListeners
DefaultSpreadsheetPanel.SheetDescriptionTextArea textArea
javax.swing.JButton okButton
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
javax.swing.JButton removeCriterion
javax.swing.JButton addCriterion
javax.swing.JRadioButton doSortColumns
javax.swing.JRadioButton doSortRows
javax.swing.JRadioButton sortRangeHasHeader
javax.swing.JToolBar toolbar
javax.swing.JTable sortCriteriaTable
javax.swing.JTable sortCriteriaSrcTable
javax.swing.JLabel rangeBookmarkButton
javax.swing.JLabel rangeGrabButton
SpreadsheetTable sheet
boolean isSelectingRange
javax.swing.JList<E> rowHeaderList
long activeStartTime
long embargoStartTime
boolean allow_undo
int preferredColumnWidth
int activeRow
int activeCol
java.lang.String currentPrefs
javax.swing.table.TableCellRenderer myRenderer
javax.swing.table.TableCellEditor myEditor
javax.swing.JPopupMenu copyPopupMenu
SharedSpreadsheetClipboard clipboard
java.util.Vector<E> rangeGrabListeners
int storedCopyStartRow
int storedCopyStartCol
int storedCopyStopRow
int storedCopyStopCol
boolean resetEdit
java.lang.String saveEdit
int saveEditRow
int saveEditColumn
int ColumnLabelRow
int RowLabelColumn
int rangeStartRow
int rangeStopRow
int rangeStartCol
int rangeStopCol
int rangeCaretPosition
int rangeLength
int rangePressCount
boolean rangeDragged
DefaultSpreadsheetPanel parentPanel
java.awt.event.MouseMotionListener[] mmls
boolean isColumnDragged
javax.swing.table.JTableHeader tableHeader
java.lang.String title
java.util.LinkedList<E> cellEditHistory
boolean alternatingRowColors
java.awt.Color altRowColor
java.awt.Color mainRowColor
DefaultSpreadsheetTable.ResizeDialog resizeDialog
DefaultSpreadsheetPanel parentPanel
ReservedFunctionFrame functionEditor
javax.swing.JPanel mainPane
javax.swing.JButton cancelButton
javax.swing.JButton selectButton
javax.swing.JButton newButton
javax.swing.JButton copyButton
javax.swing.JButton editButton
java.util.Vector<E> selectListeners
java.util.Vector<E> cancelListeners
ReservedFunctionLibrary funs
javax.swing.JTextField searchText
ReservedFunctionBrowserFrame.BasicCommentTextPane commentBox
javax.swing.JPopupMenu actionMenu
javax.swing.JTable funTable
javax.swing.JComboBox<E> categoryPopup
java.lang.String selectedCategory
RepositoryConnectionHandler connectionHandler
ReservedFunctionConfig Config
ReservedFunctionPrefs Prefs
java.util.Vector<E> items
IconServer iconServer
ReservedFunctionPrefs Prefs
ReservedFunctionPanel panel
java.util.Vector<E> reposListeners
java.util.Vector<E> uploadListeners
javax.swing.JButton repositoryView
ReservedFunctionConfig Config
ReservedFunctionConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
ReservedFunctionPrefs Prefs
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
RepositoryStorageTransferAgent transferAgent
DefaultMultiConfigNameSelectorGroup storageGroup
javax.swing.JRadioButton enabledRadio
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
javax.swing.JButton editPrefsButton
TemplateTextArea commentTextArea
javax.swing.JTextField shortDescriptionTextField
javax.swing.JComboBox<E> categoryText
TemplateTextArea groovyScriptTextArea
javax.swing.JSpinner minargcount
javax.swing.JSpinner maxargcount
javax.swing.JButton uploadButton
ReservedFunctionStorage backingStorage
javax.swing.JButton cancelButton
javax.swing.JButton helpButton
java.util.Vector<E> reposListeners
javax.swing.JButton repositoryView
CanonicalSetConfig Config
CanonicalSetConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
CanonicalSetPrefs Prefs
int OPEN_COPY_THREADS
long TIME_SPENT_COPYING
long startMillis
ParameterSetFrame setElementBrowser
javax.swing.JProgressBar progressBar
boolean NoCallbackChangeMode
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
RepositoryStorageTransferAgent transferAgent
javax.swing.JTable canonicalSetTable
DefaultMultiConfigNameSelectorGroup storageGroup
javax.swing.JRadioButton enabledRadio
javax.swing.JTextField createdOnText
javax.swing.JTextField createdByText
javax.swing.JButton editPrefsButton
TemplateTextArea commentTextArea
javax.swing.JButton uploadButton
CanonicalSetStorage backingStorage
javax.swing.JButton addButton
javax.swing.JButton paramViewButton
javax.swing.JButton removeButton
javax.swing.JButton duplicateButton
javax.swing.JSpinner duplicateSpinner
javax.swing.JSpinner startingSetViewIndex
javax.swing.JSpinner endingSetViewIndex
ReposConfigFrame repositoryEditor
StatisticalModelConfig Config
RepositoryConnectionHandler connectionHandler
StatisticalModelStorageConnectivity Connection
PrefsConfigFrame prefsEditor
GLMStorage backingStorage
IconifiedDomainNameTextField nicknameText
javax.swing.JButton declareModelVariableButton
javax.swing.JTextField declareModelVariableText
javax.swing.JButton declareModelParameterButton
javax.swing.JTextField declareModelParameterText
javax.swing.JButton repositoryView
javax.swing.JButton uploadButton
javax.swing.JButton editPrefsButton
TemplateTextArea commentTextArea
javax.swing.JTextField createdOnText
javax.swing.JTextField createdByText
javax.swing.JTable variableMappingsTable
GLMStorageFrame.MappingTableModel mappingTableModel
GLMStorageFrame.ParameterMappingTableModel paramMappingTableModel
HierarchyTree parameterTree
javax.swing.JList<E> variableGrabber
javax.swing.JButton addLeftHandSideButton
javax.swing.JButton addRightHandSideButton
javax.swing.JButton addModelClassTermButton
javax.swing.JButton addNewModelClassTermButton
javax.swing.JButton addAnalysisByTermButton
javax.swing.JButton addRandomTermButton
javax.swing.JButton addNewRandomTermButton
javax.swing.JButton removeParameterButton
javax.swing.JButton removeVariableMappingButton
javax.swing.JButton editDataSetButton
javax.swing.JTextField modelLeftHandSide
javax.swing.JTextField modelRightHandSide
javax.swing.JTable modelClassTerms
javax.swing.JTextField analysisByTerms
javax.swing.JTable randomTerms
javax.swing.JButton removeRandomTermButton
javax.swing.JButton removeClassTermButton
javax.swing.JTextField statisticalModelClass
javax.swing.JComboBox<E> dataConfigSelector
javax.swing.JButton dataReposView
IconifiedDomainNameTextField dataSetText
javax.swing.JRadioButton enabledRadio
int lastselectedsourcerow
javax.swing.JLabel waitIndicator
GLMStorageTransferAgent transferAgent
boolean NoCallbackChangeMode
java.util.Vector<E> reposListeners
IconServer iconServer
StatisticalModelToolsPrefs Prefs
GLMStorageFindNameDialog findGLM
DefaultMultiConfigNameSelectorGroup dataSetGroup
ParameterSetPanel paramPanel
java.util.Vector<E> reposListeners
ParameterSetTransferAgent transferAgent
ParameterSetFindNameDialog findParam
ParameterSetConfig Config
IconServer iconServer
RepositoryConnectionHandler connectionHandler
ParameterSetConnectivity Connection
PrefsConfigFrame prefsEditor
ReposConfigFrame repositoryEditor
ParameterSetStoragePrefs Prefs
ParameterSetStorage backingStorage
DefaultMultiConfigNameSelectorGroup dataSetGroup
javax.swing.JButton uploadButton
javax.swing.JButton repositoryView
IconifiedDomainNameTextField nicknameText
javax.swing.JTextField createdByText
javax.swing.JTextField createdOnText
DefaultMultiConfigNameSelectorGroup storageGroup
TemplateTextArea commentTextArea
javax.swing.JButton editPrefsButton
javax.swing.JRadioButton enabledRadio
HierarchyTree parameterTree
javax.swing.JButton removeParameterButton
javax.swing.JButton declareModelParameterButton
javax.swing.JTextField declareModelParameterText
ProbabilityDensity density
javax.swing.JTextField remainingTimeText
javax.swing.JButton continueButton
javax.swing.JButton restartButton
javax.swing.JButton pauseButton
Timer timer
DefaultTimerListener criticalTimeValueListener
DefaultTimerListener expiredTimeValueListener
java.lang.String soundPath
javax.swing.JPopupMenu optionsPopup
javax.swing.JTextArea matrixAsText
java.lang.String[] jumpOps
javax.swing.JComboBox<E> stepsVsIncrement
javax.swing.JTextField minValText
javax.swing.JTextField maxValText
javax.swing.JTextField jumpValText
javax.swing.JButton createMatrixButton
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.awt.event.ActionListener okcancelListener
ReposConfigFrame repositoryEditor
ImageFileConfig Config
ImageFileConnectivity Connection
javax.swing.JTable fileselector
javax.swing.JButton addSources
com.mockturtlesolutions.snifflib.vistools.workbench.ImageFileFrame.FileSourceTableModel sourcemodel
ImageFileStorage backingStorage
javax.swing.JTextArea commentTextArea
javax.swing.JTextField createdOnText
javax.swing.JTextField createdByText
RepositoryConnectionHandler connectionHandler
PrefsConfigFrame prefsEditor
javax.swing.JTextField imagefilesource
javax.swing.JRadioButton isURLButton
RepositoryStorageTransferAgent transferAgent
boolean NoCallbackChangeMode
java.util.Vector<E> reposListeners
javax.swing.JFileChooser chooser
javax.swing.JButton preview
javax.swing.JButton uploadButton
DataSetPanel previewPanel
javax.swing.JButton repositoryView
javax.swing.JButton editPrefsButton
javax.swing.JRadioButton enabledRadio
IconifiedDomainNameTextField nicknameText
IconServer iconServer
ImageFilePrefs Prefs
java.util.HashMap<K,V> map
ReposConfigFrame repositoryEditor
ImageStackConfig SetConfig
ImageFileConfig FileConfig
ImageStackConnectivity SetConnection
ImageFileConnectivity FileConnection
javax.swing.JSpinner delaySetting
javax.swing.JTable fileselector
javax.swing.JButton uploadImageFileButton
javax.swing.JButton addSources
javax.swing.JButton addSourcesFromStorage
javax.swing.JButton addSourcesFromURL
javax.swing.JButton removeSources
com.mockturtlesolutions.snifflib.vistools.workbench.ImageStackFrame.FileSourceTableModel sourcemodel
ImageStackStorage backingStorage
TemplateTextArea commentTextArea
TemplateTextArea ImageFileCommentArea
javax.swing.JTextField createdOnText
javax.swing.JTextField createdByText
RepositoryConnectionHandler FileConnectionHandler
RepositoryConnectionHandler SetConnectionHandler
PrefsConfigFrame prefsEditor
boolean complete_preview
boolean SHOULD_PULL_ImageFileS_FROM_REPOSITORY
int lastselectedsourcerow
javax.swing.JLabel waitIndicator
javax.swing.JButton sortButton
javax.swing.JButton exportFileNameButton
javax.swing.JButton exportStackButton
RepositoryStorageTransferAgent transferAgent
boolean NoCallbackChangeMode
java.util.Vector<E> reposListeners
javax.swing.JFileChooser chooser
javax.swing.JButton preview
javax.swing.JButton uploadButton
javax.swing.Box previewPanel
javax.swing.JLabel screen
javax.swing.JSpinner leastcolumn
javax.swing.JSpinner columns2show
javax.swing.JSpinner leastrow
javax.swing.JSpinner rows2show
javax.swing.JButton repositoryView
javax.swing.JButton editPrefsButton
javax.swing.JButton clearButton
javax.swing.JRadioButton enabledRadio
javax.swing.JRadioButton ImageFileEnabledRadio
IconifiedDomainNameTextField nicknameText
IconifiedDomainNameTextField ImageFilenicknameText
IconServer iconServer
ImageStackPrefs SetPrefs
ImageFilePrefs FilePrefs
javax.swing.JComboBox<E> sortProtocols
ImageStackFindNameDialog findSet
ImageFileFindNameDialog findFile
javax.swing.JTextField exportFileName
XppBettyPanel panel
java.lang.String name
javax.swing.JTextField nameText
javax.swing.JLabel nameLabel
java.awt.Container contentPane
java.util.Vector<E> okListeners
java.util.Vector<E> cancelListeners
javax.swing.JButton okButton
javax.swing.JButton cancelButton
java.util.Vector<E> reposListeners
javax.swing.JButton repositoryView
XppBettyConfig Config
XppBettyConnectivity Connection
IconifiedDomainNameTextField nicknameText
IconServer iconServer
XppBettyPrefs Prefs
PrefsConfigFrame prefsEditor
RepositoryConnectionHandler connectionHandler
RepositoryStorageTransferAgent transferAgent
DefaultMultiConfigNameSelectorGroup storageGroup
javax.swing.JRadioButton enabledRadio
DefaultDateEditor createdOnText
javax.swing.JTextField createdByText
javax.swing.JButton editPrefsButton
TemplateTextArea commentTextArea
javax.swing.JButton uploadButton
XppBettyStorage backingStorage
javax.swing.JProgressBar progressBar
boolean shouldstop
boolean shouldpause
boolean isrunning
javax.swing.JTextField xppOdeText
javax.swing.JTextField setFileText
javax.swing.JTextField includeFileText
javax.swing.JTextField icFileText
javax.swing.JTextField parFileText
javax.swing.JTextField outFileText
javax.swing.JTextField xpppathText
javax.swing.JRadioButton internsetRadio
javax.swing.JRadioButton newseedRadio
javax.swing.JSpinner bettyThreadPoolSize
javax.swing.JComboBox<E> vmChooser
int OPEN_THREADS
long TIME_SPENT
long startMillis
javax.swing.JButton refreshButton
javax.swing.JButton goButton
javax.swing.JButton pauseButton
javax.swing.JButton cancelButton
javax.swing.JButton helpButton
javax.swing.JButton odeFileButton
javax.swing.JButton setFileButton
javax.swing.JButton includeFileBu
javax.swing.JButton icFileButton
javax.swing.JButton parFileButton
javax.swing.JButton outFileButton
javax.swing.JButton includeFileButton
javax.swing.JButton xpppathButton
XppBettyHelpFrame helpframe
javax.swing.JTable internsetsTable
XppInternalSetTableModel internModel
Copyright © 2011, 2013. Daniel P. Dougherty