com.mockturtlesolutions.snifflib.mcmctools.workbench

Class MCMCFrame

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

com.mockturtlesolutions.snifflib.mcmctools.workbench.MCMCFrame

All Implemented Interfaces:

MCMCStorage, DOMStorable, GraphicalRepositoryEditor, ReposConfigurable, RepositoryEditor, RepositoryStorage, RepositoryStorageTransfer, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class MCMCFrame
extends javax.swing.JFrame
implements MCMCStorage, GraphicalRepositoryEditor

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	MCMCFrame.MCMCRunTableModel

Nested classes/interfaces inherited from class javax.swing.JFrame

javax.swing.JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
protected MCMCConfig	Config
protected MCMCStorageConnectivity	Connection
protected StatisticalModelConfig	statLikeConfig
protected StatisticalModelConfig	statPriorConfig

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
MCMCFrame()

Method Summary

Methods

Modifier and Type	Method and Description
void	addMCMCRun(java.lang.String runName) Adds the named run to the list of associated runs.
void	addRepositoryListener(RepositoryListener l) Adds a listener to the list that's notified each time a change to the repository occurs.
void	afterCopyStorage()
void	afterTransferStorage()
void	beforeCopyStorage()
void	beforeTransferStorage()
void	clearMCMCRuns()
void	copyStorage(RepositoryStorage that)
void	copyStorageCommands(RepositoryStorage x)
void	enableMCMCRunsList(boolean b)
void	executeTransfer()
void	fireRepositoryChanged(RepositoryEvent ev) Forwards the given notification event to all RepositoryListeners that registered themselves as listeners for this object.
RepositoryElement	getCandidateObjectRepositoryElement()
RepositoryElement	getCandidateParameterRepositoryElement()
java.lang.String	getComment() Gets the descriptive comment for this Wedge inverse problem as a whole.
java.lang.String	getCreatedBy()
java.lang.String	getCreatedOn()
java.lang.Class	getDefaultGraphicalEditorClass()
java.lang.Class	getDOMStorageClass()
java.lang.String	getEnabled() Gets the state of the (possibly remote) storage.
StatisticalModelStorage	getLikelihoodStorage()
java.lang.String	getLikelihoodStorageConfigClass()
java.lang.String	getLikelihoodStorageNickname()
java.lang.String	getLikelihoodStorageRepositoryName()
java.util.Vector	getMCMCRunNames() Gets a list of names of runs associated with this MCMC configuration.
RepositoryElement	getMCMCSamplerRepositoryElement()
java.lang.String	getNickname() Gets the project name for this Wedge inverse problem.
RepositoryElement	getPreviousObjectRepositoryElement()
RepositoryElement	getPreviousParameterRepositoryElement()
java.lang.String	getPriorStorageConfigClass()
java.lang.String	getPriorStorageNickname()
java.lang.String	getPriorStorageRepositoryName()
RepositoryElement	getReferenceParameterSetRepositoryElement()
java.lang.String	getRepository()
java.lang.Class	getStorageTransferAgentClass()
void	removeMCMCRun(java.lang.String name) Removes the named run from the list of associated runs.
void	removeRepositoryListener(RepositoryListener l) Removes a listener from the list that's notified each time a change to the repository occurs.
void	setCandidateObjectRepositoryElement(RepositoryElement elem)
void	setCandidateParameterRepositoryElement(RepositoryElement elem)
void	setComment(java.lang.String c)
void	setCreatedBy(java.lang.String c)
void	setCreatedOn(java.lang.String c)
void	setEditable(boolean b)
void	setEnabled(java.lang.String n) Sets the enabled state of the (possibly remote) storage instance.
void	setLikelihoodStorageConfigClass(java.lang.String cls)
void	setLikelihoodStorageNickname(java.lang.String nn)
void	setLikelihoodStorageRepositoryName(java.lang.String repos)
void	setMCMCSamplerRepositoryElement(RepositoryElement elem)
void	setNickname(java.lang.String c) Sets the project name for this Wedge inverse problem.
void	setPreviousObjectRepositoryElement(RepositoryElement elem)
void	setPreviousParameterRepositoryElement(RepositoryElement elem)
void	setPriorStorageConfigClass(java.lang.String cls)
void	setPriorStorageNickname(java.lang.String nn)
void	setPriorStorageRepositoryName(java.lang.String repos)
void	setReferenceParameterSetRepositoryElement(RepositoryElement elem)
void	setRepository(java.lang.String repos)
void	transferStorage(RepositoryStorage that)
void	transferStorageCommands(RepositoryStorage x)

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

Config

protected MCMCConfig Config

Connection

protected MCMCStorageConnectivity Connection

statLikeConfig

protected StatisticalModelConfig statLikeConfig

statPriorConfig

protected StatisticalModelConfig statPriorConfig

Constructor Detail

MCMCFrame

public MCMCFrame()

Method Detail

enableMCMCRunsList

public void enableMCMCRunsList(boolean b)

setEditable

public void setEditable(boolean b)

executeTransfer

public void executeTransfer()

fireRepositoryChanged

public void fireRepositoryChanged(RepositoryEvent ev)

Description copied from interface: ReposConfigurable

Forwards the given notification event to all RepositoryListeners that registered themselves as listeners for this object.

Specified by:

fireRepositoryChanged in interface ReposConfigurable

getDefaultGraphicalEditorClass

public java.lang.Class getDefaultGraphicalEditorClass()

Specified by:

getDefaultGraphicalEditorClass in interface RepositoryStorage

getStorageTransferAgentClass

public java.lang.Class getStorageTransferAgentClass()

getReferenceParameterSetRepositoryElement

public RepositoryElement getReferenceParameterSetRepositoryElement()

Specified by:

getReferenceParameterSetRepositoryElement in interface MCMCStorage

setReferenceParameterSetRepositoryElement

public void setReferenceParameterSetRepositoryElement(RepositoryElement elem)

Specified by:

setReferenceParameterSetRepositoryElement in interface MCMCStorage

setComment

public void setComment(java.lang.String c)

Specified by:

setComment in interface RepositoryStorage

getComment

public java.lang.String getComment()

Description copied from interface: RepositoryStorage

Gets the descriptive comment for this Wedge inverse problem as a whole.

Specified by:

getComment in interface RepositoryStorage

setCreatedOn

public void setCreatedOn(java.lang.String c)

Specified by:

setCreatedOn in interface RepositoryStorage

getCreatedOn

public java.lang.String getCreatedOn()

Specified by:

getCreatedOn in interface RepositoryStorage

setCreatedBy

public void setCreatedBy(java.lang.String c)

Specified by:

setCreatedBy in interface RepositoryStorage

getCreatedBy

public java.lang.String getCreatedBy()

Specified by:

getCreatedBy in interface RepositoryStorage

setNickname

public void setNickname(java.lang.String c)

Description copied from interface: RepositoryStorage

Sets the project name for this Wedge inverse problem.

Specified by:

setNickname in interface RepositoryStorage

getNickname

public java.lang.String getNickname()

Description copied from interface: RepositoryStorage

Gets the project name for this Wedge inverse problem.

Specified by:

getNickname in interface RepositoryStorage

setEnabled

public void setEnabled(java.lang.String n)

Description copied from interface: RepositoryStorage

Sets the enabled state of the (possibly remote) storage instance. Typically a storage is backed by static information stored in a database.

Specified by:

setEnabled in interface RepositoryStorage

getEnabled

public java.lang.String getEnabled()

Description copied from interface: RepositoryStorage

Gets the state of the (possibly remote) storage. For example, dis-enabled storages may be slated for deletion from some repostories. Typically a storage is backed by static information stored in a database.

Specified by:

getEnabled in interface RepositoryStorage

removeRepositoryListener

public void removeRepositoryListener(RepositoryListener l)

Description copied from interface: ReposConfigurable

Removes a listener from the list that's notified each time a change to the repository occurs.

Specified by:

removeRepositoryListener in interface ReposConfigurable

Specified by:

removeRepositoryListener in interface RepositoryStorage

addRepositoryListener

public void addRepositoryListener(RepositoryListener l)

Description copied from interface: ReposConfigurable

Adds a listener to the list that's notified each time a change to the repository occurs.

Specified by:

addRepositoryListener in interface ReposConfigurable

Specified by:

addRepositoryListener in interface RepositoryStorage

beforeCopyStorage

public void beforeCopyStorage()

Specified by:

beforeCopyStorage in interface RepositoryStorageTransfer

afterCopyStorage

public void afterCopyStorage()

Specified by:

afterCopyStorage in interface RepositoryStorageTransfer

copyStorageCommands

public void copyStorageCommands(RepositoryStorage x)

Specified by:

copyStorageCommands in interface RepositoryStorageTransfer

beforeTransferStorage

public void beforeTransferStorage()

Specified by:

beforeTransferStorage in interface RepositoryStorageTransfer

afterTransferStorage

public void afterTransferStorage()

Specified by:

afterTransferStorage in interface RepositoryStorageTransfer

setRepository

public void setRepository(java.lang.String repos)

Specified by:

setRepository in interface ReposConfigurable

getRepository

public java.lang.String getRepository()

copyStorage

public void copyStorage(RepositoryStorage that)

Specified by:

copyStorage in interface RepositoryStorageTransfer

transferStorage

public void transferStorage(RepositoryStorage that)

Specified by:

transferStorage in interface RepositoryStorageTransfer

transferStorageCommands

public void transferStorageCommands(RepositoryStorage x)

Specified by:

transferStorageCommands in interface RepositoryStorageTransfer

getDOMStorageClass

public java.lang.Class getDOMStorageClass()

Specified by:

getDOMStorageClass in interface DOMStorable

setLikelihoodStorageConfigClass

public void setLikelihoodStorageConfigClass(java.lang.String cls)

Specified by:

setLikelihoodStorageConfigClass in interface MCMCStorage

getLikelihoodStorageConfigClass

public java.lang.String getLikelihoodStorageConfigClass()

Specified by:

getLikelihoodStorageConfigClass in interface MCMCStorage

setLikelihoodStorageRepositoryName

public void setLikelihoodStorageRepositoryName(java.lang.String repos)

Specified by:

setLikelihoodStorageRepositoryName in interface MCMCStorage

getLikelihoodStorageRepositoryName

public java.lang.String getLikelihoodStorageRepositoryName()

Specified by:

getLikelihoodStorageRepositoryName in interface MCMCStorage

setLikelihoodStorageNickname

public void setLikelihoodStorageNickname(java.lang.String nn)

Specified by:

setLikelihoodStorageNickname in interface MCMCStorage

getLikelihoodStorageNickname

public java.lang.String getLikelihoodStorageNickname()

Specified by:

getLikelihoodStorageNickname in interface MCMCStorage

setPriorStorageConfigClass

public void setPriorStorageConfigClass(java.lang.String cls)

Specified by:

setPriorStorageConfigClass in interface MCMCStorage

getPriorStorageConfigClass

public java.lang.String getPriorStorageConfigClass()

Specified by:

getPriorStorageConfigClass in interface MCMCStorage

setPriorStorageRepositoryName

public void setPriorStorageRepositoryName(java.lang.String repos)

Specified by:

setPriorStorageRepositoryName in interface MCMCStorage

getPriorStorageRepositoryName

public java.lang.String getPriorStorageRepositoryName()

Specified by:

getPriorStorageRepositoryName in interface MCMCStorage

setPriorStorageNickname

public void setPriorStorageNickname(java.lang.String nn)

Specified by:

setPriorStorageNickname in interface MCMCStorage

getPriorStorageNickname

public java.lang.String getPriorStorageNickname()

Specified by:

getPriorStorageNickname in interface MCMCStorage

getLikelihoodStorage

public StatisticalModelStorage getLikelihoodStorage()

Specified by:

getLikelihoodStorage in interface MCMCStorage

addMCMCRun

public void addMCMCRun(java.lang.String runName)

Adds the named run to the list of associated runs.

Specified by:

addMCMCRun in interface MCMCStorage

removeMCMCRun

public void removeMCMCRun(java.lang.String name)

Removes the named run from the list of associated runs.

Specified by:

removeMCMCRun in interface MCMCStorage

clearMCMCRuns

public void clearMCMCRuns()

Specified by:

clearMCMCRuns in interface MCMCStorage

getMCMCRunNames

public java.util.Vector getMCMCRunNames()

Gets a list of names of runs associated with this MCMC configuration.

Specified by:

getMCMCRunNames in interface MCMCStorage

setMCMCSamplerRepositoryElement

public void setMCMCSamplerRepositoryElement(RepositoryElement elem)

getMCMCSamplerRepositoryElement

public RepositoryElement getMCMCSamplerRepositoryElement()

setPreviousParameterRepositoryElement

public void setPreviousParameterRepositoryElement(RepositoryElement elem)

getPreviousParameterRepositoryElement

public RepositoryElement getPreviousParameterRepositoryElement()

setPreviousObjectRepositoryElement

public void setPreviousObjectRepositoryElement(RepositoryElement elem)

getPreviousObjectRepositoryElement

public RepositoryElement getPreviousObjectRepositoryElement()

setCandidateParameterRepositoryElement

public void setCandidateParameterRepositoryElement(RepositoryElement elem)

getCandidateParameterRepositoryElement

public RepositoryElement getCandidateParameterRepositoryElement()

setCandidateObjectRepositoryElement

public void setCandidateObjectRepositoryElement(RepositoryElement elem)

getCandidateObjectRepositoryElement

public RepositoryElement getCandidateObjectRepositoryElement()