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N

N - Variable in class com.mockturtlesolutions.snifflib.invprobs.DiffEvol
 
N - Variable in class com.mockturtlesolutions.snifflib.invprobs.NMSimplex
 
name - Variable in class com.mockturtlesolutions.snifflib.graphics.SLComponent
 
Name - Variable in class com.mockturtlesolutions.snifflib.sqldig.database.SQLDatabase
 
Name - Variable in class com.mockturtlesolutions.snifflib.sqldig.database.SQLTable
 
NAME_CHANGED - Static variable in class com.mockturtlesolutions.snifflib.spreadsheets.ScriptEvent
 
name_id - Variable in class com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStoragePostgreSQL
 
name_id - Variable in class com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStorageSQL
 
name_id - Variable in class com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStorageSQLite
 
Nameable - Interface in com.mockturtlesolutions.snifflib.datatypes
Allows an instance to be known by a name.
NameableCellRenderer - Class in com.mockturtlesolutions.snifflib.graphics
 
NameableCellRenderer() - Constructor for class com.mockturtlesolutions.snifflib.graphics.NameableCellRenderer
 
NamedColumnMapping - Interface in com.mockturtlesolutions.snifflib.datatypes
Interface useful in situations where algorithmically a matrix (DblMatrix) is expected but for convenience one would want to refer to columns by name.
NamedParameterNode - Class in com.mockturtlesolutions.snifflib.guitools.components
Node intended for DomainNameTree.
NamedParameterNode() - Constructor for class com.mockturtlesolutions.snifflib.guitools.components.NamedParameterNode
 
NamedParameterNode(String) - Constructor for class com.mockturtlesolutions.snifflib.guitools.components.NamedParameterNode
 
NamedParameterNode(String, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.guitools.components.NamedParameterNode
 
NamedParameterNode(String, String) - Constructor for class com.mockturtlesolutions.snifflib.guitools.components.NamedParameterNode
 
NamedParameterNode(String, String, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.guitools.components.NamedParameterNode
 
NamedParameters - Interface in com.mockturtlesolutions.snifflib.invprobs
NamedParameters is an interface for models and other objects that have parameters.
nameEd - Variable in class com.mockturtlesolutions.snifflib.graphics.AbstractIconEntity
 
NameEditor - Class in com.mockturtlesolutions.snifflib.graphics
 
NameEditor(String) - Constructor for class com.mockturtlesolutions.snifflib.graphics.NameEditor
 
NameEditor(String, String) - Constructor for class com.mockturtlesolutions.snifflib.graphics.NameEditor
 
nameOf(String) - Method in class com.mockturtlesolutions.snifflib.spreadsheets.DefaultSpreadsheetPanel.ManageSelectionBookmarksFrame
Returns the name (if any) of the first bookmark having the indicated spreadsheet cell range.
nameOf(String) - Method in class com.mockturtlesolutions.snifflib.spreadsheets.DefaultSpreadsheetPanel
Returns the name (if any) of the first bookmark having the indicated spreadsheet cell range.
NameQueryCellRenderer - Class in com.mockturtlesolutions.snifflib.reposconfig.graphical
 
NameQueryCellRenderer(IconServer) - Constructor for class com.mockturtlesolutions.snifflib.reposconfig.graphical.NameQueryCellRenderer
 
NameQueryNode - Class in com.mockturtlesolutions.snifflib.reposconfig.graphical
 
NameQueryNode() - Constructor for class com.mockturtlesolutions.snifflib.reposconfig.graphical.NameQueryNode
 
NameQueryNode(String, String, String) - Constructor for class com.mockturtlesolutions.snifflib.reposconfig.graphical.NameQueryNode
 
NameQueryTree - Class in com.mockturtlesolutions.snifflib.reposconfig.graphical
 
NameQueryTree() - Constructor for class com.mockturtlesolutions.snifflib.reposconfig.graphical.NameQueryTree
 
names - Variable in class com.mockturtlesolutions.snifflib.mcmctools.workbench.GaussianProposalPanel.ParamTableModel
 
nameText - Variable in class com.mockturtlesolutions.snifflib.guitools.components.IconifiedDomainNameTextField
 
NaN - Static variable in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
 
nchoosek(int, int) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
 
nchoosek(double, double) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
 
nchoosek(DblMatrix, DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
 
NDGrid - Class in com.mockturtlesolutions.snifflib.pde
General class for creating N-Dimensional (potentially non-uniform) Cartesean grids.
NDGrid() - Constructor for class com.mockturtlesolutions.snifflib.pde.NDGrid
Constructs a 1D grid of 11 points on [0,1].
NDGrid(DblMatrix, DblMatrix, int) - Constructor for class com.mockturtlesolutions.snifflib.pde.NDGrid
Creates Cartesean grid with N points in each dimension.
NDGrid(DblMatrix, DblMatrix, int[]) - Constructor for class com.mockturtlesolutions.snifflib.pde.NDGrid
Creates Cartesean grid with N[d] points in dimension d.
NDGrid(DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.pde.NDGrid
Construct a 1D grid using the given points as coordinate vector.
NDGrid(DblMatrix, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.pde.NDGrid
Construct a 2D grid using the given points as coordinate vector.
NDGrid(DblMatrix, DblMatrix, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.pde.NDGrid
Construct a 3D grid using the given points as coordinate vector.
NearestDistances - Variable in class com.mockturtlesolutions.snifflib.util.NNCalc
 
NearestXData - Variable in class com.mockturtlesolutions.snifflib.util.NNCalc
 
NEG_LOG_LIKELIHOOD - Static variable in class com.mockturtlesolutions.snifflib.invprobs.StatisticalModel
 
NEGATIVE_INFINITY - Static variable in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
 
negLogLikelihood() - Method in class com.mockturtlesolutions.snifflib.invprobs.BayesianLinear
 
negLogLikelihood() - Method in interface com.mockturtlesolutions.snifflib.invprobs.Likelihood
Return the negative of the log-likelihood evaluated at the given Y values.
negLogLikelihood() - Method in class com.mockturtlesolutions.snifflib.invprobs.StatisticalModel
Returns the default negative log likelihood of INF.
negLogLikelihood() - Method in class com.mockturtlesolutions.snifflib.testfun.MichaelisMenten
Provides negative log likelihood for Michaelis-Menten using the assumption of i.i.d Gaussian errors.
negLogLikeNewGivenOld() - Method in class com.mockturtlesolutions.snifflib.invprobs.AbstractProposalDistribution
 
negLogLikeNewGivenOld() - Method in interface com.mockturtlesolutions.snifflib.invprobs.ProposalDistribution
 
negLogLikeOldGivenNew() - Method in class com.mockturtlesolutions.snifflib.invprobs.AbstractProposalDistribution
 
negLogLikeOldGivenNew() - Method in interface com.mockturtlesolutions.snifflib.invprobs.ProposalDistribution
 
negLogPrior() - Method in class com.mockturtlesolutions.snifflib.invprobs.AbstractProposalDistribution
 
negLogPrior() - Method in class com.mockturtlesolutions.snifflib.invprobs.GaussianProposal
 
negLogPrior() - Method in class com.mockturtlesolutions.snifflib.invprobs.StatisticalModel
Returns the negative log of the prior probability of the current parameter set.
neq(DblMatrix) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Boolean equality comparison determining not-equal-to.
neq(int) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Boolean inequality comparison determining not-equal-to.
neq(double) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Boolean inequality comparison determining not-equal-to.
NeummanCondition - Class in com.mockturtlesolutions.snifflib.pde
Create a Neumman condition for inclusion in a PDE problem.
NeummanCondition() - Constructor for class com.mockturtlesolutions.snifflib.pde.NeummanCondition
 
NeummanCondition(AbstractFunction) - Constructor for class com.mockturtlesolutions.snifflib.pde.NeummanCondition
 
NeummanCondition(AbstractBoundaryCondition) - Constructor for class com.mockturtlesolutions.snifflib.pde.NeummanCondition
 
NEW_WINDOW_REQUEST - Static variable in class com.mockturtlesolutions.snifflib.spreadsheets.SpreadsheetPanelEvent
 
newAxes() - Method in class com.mockturtlesolutions.snifflib.graphics.SLFigure
Adds a new SLAxes to the this SLFigure.
newLine(DblMatrix, DblMatrix) - Method in class com.mockturtlesolutions.snifflib.graphics.SLAxes
Adds a new SLLine to the this SLAxes.
newLine(DblMatrix, DblMatrix, Color) - Method in class com.mockturtlesolutions.snifflib.graphics.SLAxes
Adds a new SLLine to the this SLAxes.
newParams - Variable in class com.mockturtlesolutions.snifflib.invprobs.AbstractProposalDistribution
 
newparse() - Method in class com.mockturtlesolutions.snifflib.datatypes.DataSetReader
 
newPlotFrame() - Static method in class com.mockturtlesolutions.snifflib.graphics.SLFigure
Convenience syntax for creating a stand-alone figure in a JFrame.
nextAfter(DblMatrix, DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Returns the floating-point number adjacent to the first argument in the direction of the second argument.
nextAfter(DblMatrix, double) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Returns the floating-point number adjacent to the first argument in the direction of the second argument.
nextAfter(DblMatrix, float) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Returns the floating-point number adjacent to the first argument in the direction of the second argument.
nextAfter(double, DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Returns the floating-point number adjacent to the first argument in the direction of the second argument.
nextAfter(float, DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Returns the floating-point number adjacent to the first argument in the direction of the second argument.
nextInterpIndex - Variable in class com.mockturtlesolutions.snifflib.integration.OdeReporter
 
nextInterpT - Variable in class com.mockturtlesolutions.snifflib.integration.OdeReporter
 
nextStateIsProcessFork() - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.MCMCRunState
 
nextUp(DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Returns the floating-point value adjacent to d in the direction of positive infinity.
Nhood - Class in com.mockturtlesolutions.snifflib.util
Class for producing various neighborhood stencils on N-dimensional matrices using different topologies.
Nhood(int[]) - Constructor for class com.mockturtlesolutions.snifflib.util.Nhood
Create a neighborhood operator for a matrix of dimension Size.
NhoodMap - Class in com.mockturtlesolutions.snifflib.util
Hash of the NhoodMapping's for each non-zero stencil value.
NhoodMap() - Constructor for class com.mockturtlesolutions.snifflib.util.NhoodMap
Empty constructor.
NhoodMapped - Class in com.mockturtlesolutions.snifflib.util
A utility class used to hold the result of a call to a Nhood's MapFrom method.
NhoodMapped(int, int, Object) - Constructor for class com.mockturtlesolutions.snifflib.util.NhoodMapped
 
NhoodMappedValue - Class in com.mockturtlesolutions.snifflib.util
A utility class used to hold the result of a call to a Nhood's MapFrom method.
NhoodMappedValue(int, int, Object) - Constructor for class com.mockturtlesolutions.snifflib.util.NhoodMappedValue
 
NhoodMapping - Interface in com.mockturtlesolutions.snifflib.util
Classes implementing the NhoodMapping interface can be added to the NhoodMap of a Nhood.
NhoodSum - Class in com.mockturtlesolutions.snifflib.util
 
NhoodSum(DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.util.NhoodSum
Construct an NhoodMapping that will calculate the cardinal sums for a matrix X.
nickname - Variable in class com.mockturtlesolutions.snifflib.reposconfig.database.AbstractRepositoryStorage
 
nickname - Variable in class com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryItem
 
NMSimplex - Class in com.mockturtlesolutions.snifflib.invprobs
 
NMSimplex(OptimizableScalar, DblParamSet) - Constructor for class com.mockturtlesolutions.snifflib.invprobs.NMSimplex
Construct a new Nelder-Mead Simplex using an model and an intial parameter guess.
NMSimplexConfiguration - Class in com.mockturtlesolutions.snifflib.invprobs
 
NMSimplexConfiguration(DblParamSet) - Constructor for class com.mockturtlesolutions.snifflib.invprobs.NMSimplexConfiguration
 
NNBandwidth - Class in com.mockturtlesolutions.snifflib.invprobs
 
NNBandwidth(Lpreg) - Constructor for class com.mockturtlesolutions.snifflib.invprobs.NNBandwidth
 
NNCalc - Class in com.mockturtlesolutions.snifflib.util
Class for determining nearest neighbors.
NNCalc(DblMatrix[]) - Constructor for class com.mockturtlesolutions.snifflib.util.NNCalc
DblMatrix constructor.
NO_MARKER - Static variable in class com.mockturtlesolutions.snifflib.graphics.DefaultLineStyle
 
Node - Variable in class com.mockturtlesolutions.snifflib.util.QTreeNode
 
noHeaders() - Method in class com.mockturtlesolutions.snifflib.datatypes.DataSetReader
Informs the parser that headers are not to be parsed from the data file.
NONSTIFF_SOLVER - Static variable in class com.mockturtlesolutions.snifflib.integration.OdeSolver
 
normal - Variable in class com.mockturtlesolutions.snifflib.invprobs.BayesianLinear
 
NormalDistribution - Class in com.mockturtlesolutions.snifflib.stats
 
NormalDistribution() - Constructor for class com.mockturtlesolutions.snifflib.stats.NormalDistribution
 
NormalDistribution(DblMatrix, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormalDistribution
 
NormalDistribution(double, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormalDistribution
 
NormalDistribution(DblMatrix, double) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormalDistribution
 
NormalDistribution(double, double) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormalDistribution
 
NormalDistribution(int, int) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormalDistribution
 
NormalWeightAlgorithm - Class in com.mockturtlesolutions.snifflib.invprobs
Normal kernel weight function.
NormalWeightAlgorithm() - Constructor for class com.mockturtlesolutions.snifflib.invprobs.NormalWeightAlgorithm
 
normIncGamma(DblMatrix, DblMatrix) - Method in class com.mockturtlesolutions.snifflib.util.AbstractIncGammaAlgorithm
Return the normalized incomplete gamma.
normIncGamma(DblMatrix, DblMatrix) - Method in class com.mockturtlesolutions.snifflib.util.IncGamma
 
normOntoPlane(DblMatrix, DblMatrix, int) - Method in class com.mockturtlesolutions.snifflib.util.Triangulation
 
NormPDF - Class in com.mockturtlesolutions.snifflib.stats
 
NormPDF() - Constructor for class com.mockturtlesolutions.snifflib.stats.NormPDF
 
NormPDF(DblMatrix, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormPDF
 
NormPDF(double, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormPDF
 
NormPDF(DblMatrix, double) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormPDF
 
NormPDF(double, double) - Constructor for class com.mockturtlesolutions.snifflib.stats.NormPDF
 
normRand(int[]) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblRandom
Create a matrix whose entries are generated from a Normal(0,1) distribution.
normRand(double, double, int[]) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblRandom
Create a matrix whose entries are generated from a Normal(Mean,Variance) distribution.
noTypes() - Method in class com.mockturtlesolutions.snifflib.datatypes.DataSetReader
Informs the parser that types are not to be determined from the data file.
nowIsTheTime() - Static method in class com.mockturtlesolutions.snifflib.semantics.FillerText
Famous typing exercise quote.
NRIncBetaAlgorithm - Class in com.mockturtlesolutions.snifflib.util
Algorithm is based on Numerical Recipies in Fortran p.220-221.
NRIncBetaAlgorithm() - Constructor for class com.mockturtlesolutions.snifflib.util.NRIncBetaAlgorithm
 
NRLogGammaAlgorithm - Class in com.mockturtlesolutions.snifflib.util
Algorithm is based on Numerical Recipies in Fortran.
NRLogGammaAlgorithm() - Constructor for class com.mockturtlesolutions.snifflib.util.NRLogGammaAlgorithm
 
NRLUAlgorithm - Class in com.mockturtlesolutions.snifflib.linalg
This LU algorithm closely follows the one given in Numerical Recipes in Fortran by Press et al.
NRLUAlgorithm(DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.linalg.NRLUAlgorithm
 
NRQRAlgorithm - Class in com.mockturtlesolutions.snifflib.linalg
This QR algorithm closely follows the one given in Numerical Recipes in Fortran by Press et al.
NRQRAlgorithm(DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.linalg.NRQRAlgorithm
Construct with a DblMatrix.
NRSVDAlgorithm - Class in com.mockturtlesolutions.snifflib.linalg
This SVD algorithm closely follows the one given in Numerical Recipes in Fortran by Press et al.
NRSVDAlgorithm() - Constructor for class com.mockturtlesolutions.snifflib.linalg.NRSVDAlgorithm
 
NRSVDAlgorithm(DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.linalg.NRSVDAlgorithm
 
Null - Variable in class com.mockturtlesolutions.snifflib.sqldig.database.SQLField
 
nullspace() - Method in class com.mockturtlesolutions.snifflib.linalg.AbstractSVDAlgorithm
Return an orthonormal basis for the nullspace of the decomposed matrix.
nullspace() - Method in class com.mockturtlesolutions.snifflib.linalg.NRSVDAlgorithm
 
nullspace(DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.linalg.NRSVDAlgorithm
 
nullspace() - Method in interface com.mockturtlesolutions.snifflib.linalg.SVDAlgorithm
Return an orthonormal basis for the nullspace of the decomposed matrix.
nullspace() - Method in class com.mockturtlesolutions.snifflib.linalg.SVDFact
Return an orthonormal basis for the nullspace of the decomposed matrix.
numberNonEmpty() - Method in class com.mockturtlesolutions.snifflib.datatypes.database.MatrixStorageSetterGetter
Return the number of non-empty elements
numberNonEmpty() - Method in class com.mockturtlesolutions.snifflib.datatypes.DenseSetterGetter
Return the number of non-empty elements
numberNonEmpty() - Method in class com.mockturtlesolutions.snifflib.datatypes.MatrixSetterGetter
Return the number of non-empty elements
numberNonEmpty() - Method in class com.mockturtlesolutions.snifflib.datatypes.SparseSetterGetter
Return the number of non-empty elements
numberNonZero() - Method in class com.mockturtlesolutions.snifflib.datatypes.SblMatrix
Return the number of non-zero entries.
numberOfCoefficients() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableDOM
 
numberOfCoefficients() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariablePostgreSQL
 
numberOfCoefficients() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableSQL
 
numberOfCoefficients() - Method in interface com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableStorage
 
numberOfCoefficients() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableXML
 
numberOfCoefficients() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.workbench.CanonicalVariableFrame
 
numberOfCoefficients() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.workbench.CanonicalVariablePanel
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableDOM
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableXML
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetDOM
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetPostgreSQL
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetSQL
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetSQLite
 
numberOfParams() - Method in interface com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetStorage
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetXML
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.workbench.CanonicalVariablePanel
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.workbench.ParameterSetFrame
 
numberOfParams() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.workbench.ParameterSetPanel
 
NumberOfRecents - Variable in class com.mockturtlesolutions.snifflib.reposconfig.graphical.ConfiguredComboBox
 
NumericDeriv - Class in com.mockturtlesolutions.snifflib.integration
Class useful for calculating commonly used numerical derivatives.
NumericDeriv(VectorValued) - Constructor for class com.mockturtlesolutions.snifflib.integration.NumericDeriv
 
numParams() - Method in class com.mockturtlesolutions.snifflib.invprobs.DistributedStatisticalModel
 
numParams() - Method in class com.mockturtlesolutions.snifflib.invprobs.StatisticalModel
Return the number of parameters.
NumParams - Variable in class com.mockturtlesolutions.snifflib.invprobs.VisualScalarOptimizer
 
NumRemTerms - Variable in class com.mockturtlesolutions.snifflib.invprobs.Lpreg
 
nzDivideBy(DblMatrix) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Divide one matrix by another.
nzDivideBy(double) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Divide one matrix by another.
nzDivideBy(Double) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Divide one matrix by another.
nzDivideBy(int) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
Divide one matrix by another.
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Copyright © 2011, 2013. Daniel P. Dougherty