- ObjectReportable - Interface in com.mockturtlesolutions.snifflib.graphics
-
- ObjectReporter - Class in com.mockturtlesolutions.snifflib.graphics
-
- ObjectReporter() - Constructor for class com.mockturtlesolutions.snifflib.graphics.ObjectReporter
-
- objectReporterHasListeners(String) - Method in interface com.mockturtlesolutions.snifflib.graphics.ObjectReportable
-
- ObjectReportInstance - Class in com.mockturtlesolutions.snifflib.graphics
-
- ObjectReportInstance() - Constructor for class com.mockturtlesolutions.snifflib.graphics.ObjectReportInstance
-
- ObjectSampler - Interface in com.mockturtlesolutions.snifflib.invprobs
-
Provides methods for classes wishing to generate samples of objects.
- ObjectSamplerClient - Interface in com.mockturtlesolutions.snifflib.invprobs
-
- ODD_PARTS - Static variable in class com.mockturtlesolutions.snifflib.util.Lentz
-
- oddTermA(int) - Method in class com.mockturtlesolutions.snifflib.util.AbstractContFracFun
-
- oddTermA(int) - Method in interface com.mockturtlesolutions.snifflib.util.ContinuedFractionFunction
-
- oddTermB(int) - Method in class com.mockturtlesolutions.snifflib.util.AbstractContFracFun
-
- oddTermB(int) - Method in interface com.mockturtlesolutions.snifflib.util.ContinuedFractionFunction
-
- ode - Variable in class com.mockturtlesolutions.snifflib.integration.AbstractOdeSolver
-
- Ode - Class in com.mockturtlesolutions.snifflib.integration
-
The getDeriv() and related methods do not accept input arguments.
- Ode() - Constructor for class com.mockturtlesolutions.snifflib.integration.Ode
-
- OdeDemo - Class in com.mockturtlesolutions.snifflib.integration
-
- OdeDemo() - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeDemo
-
- OdeDemoFrame - Class in com.mockturtlesolutions.snifflib.integration
-
- OdeDemoFrame(String) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeDemoFrame
-
- OdeDemoFrame.Animation - Class in com.mockturtlesolutions.snifflib.integration
-
A separate thread needs to be run for the animation to display correctly (or at all).
- OdeDemoFrame.Animation() - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeDemoFrame.Animation
-
- OdeModel - Class in com.mockturtlesolutions.snifflib.integration
-
This model wraps an OdeSolver and extends the StatisticalModel.
- OdeModel(OdeSolver) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeModel
-
- OdeModel(OdeSolver, DataSet) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeModel
-
- OdeModel(OdeSolver, DblMatrix[], DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeModel
-
- OdeNameEditor - Class in com.mockturtlesolutions.snifflib.integration
-
- OdeNameEditor(String) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeNameEditor
-
- OdeReporter - Class in com.mockturtlesolutions.snifflib.integration
-
This class stores, modifies and reports on various inputs from ODE solvers.
- OdeReporter() - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeReporter
-
- OdeReporter.TraceQueueElement - Class in com.mockturtlesolutions.snifflib.integration
-
- OdeReporter.TraceQueueElement(DblMatrix, DblMatrix) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeReporter.TraceQueueElement
-
- OdeReportInstance - Class in com.mockturtlesolutions.snifflib.integration
-
- OdeReportInstance() - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeReportInstance
-
- odeset - Class in com.mockturtlesolutions.snifflib.integration
-
- OdeSet - Class in com.mockturtlesolutions.snifflib.integration
-
Standard options for Ode solvers.
- odeset() - Constructor for class com.mockturtlesolutions.snifflib.integration.odeset
-
- OdeSet() - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeSet
-
- OdeSolution - Interface in com.mockturtlesolutions.snifflib.integration
-
Algorithms designed to solve ODE's must implment this interface.
- OdeSolver - Class in com.mockturtlesolutions.snifflib.integration
-
Decorator class for ODE algorithms.
- OdeSolver(Ode) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeSolver
-
- OdeSolver(Ode, OdeSet) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeSolver
-
Constructs an ODE solution using a solver known to perform well for
a certain class of problems.
- OdeSolver(AbstractOdeSolver) - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeSolver
-
Constructs an ODE solution using the provided algorithm.
- OdeUpdate - Class in com.mockturtlesolutions.snifflib.integration
-
We write this as a class rather than interface because we want to force end-users to
encapsulate rather than writing update methods than need to have multiple side-effects.
- OdeUpdate() - Constructor for class com.mockturtlesolutions.snifflib.integration.OdeUpdate
-
- OdeUpdater - Interface in com.mockturtlesolutions.snifflib.integration
-
An interface typically implemented by an AbstractOdeSolution that operates as
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.MCMCTraceDOM
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.MCMCTracePostgreSQL
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.MCMCTraceSQL
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in interface com.mockturtlesolutions.snifflib.mcmctools.database.MCMCTraceStorage
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.MCMCTraceXML
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.mcmctools.workbench.MCMCTraceFrame
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalSetDOM
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalSetPostgreSQL
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalSetSQL
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in interface com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalSetStorage
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalSetXML
-
Inserts the specified RepositoryElement at the end of this trace.
- offer(RepositoryElement) - Method in class com.mockturtlesolutions.snifflib.statmodeltools.workbench.CanonicalSetFrame
-
Inserts the specified RepositoryElement at the end of this set.
- offerObjectSamplingFor(String) - Method in class com.mockturtlesolutions.snifflib.invprobs.MetropolisHastings
-
- offerObjectSamplingFor(String) - Method in interface com.mockturtlesolutions.snifflib.invprobs.ObjectSamplerClient
-
- offerObjectSamplingFor(String) - Method in class com.mockturtlesolutions.snifflib.invprobs.StatisticalModel
-
Any StatisticalModel can add to the object sampling it provides by name.
- offersObjectSamplingFor(String) - Method in class com.mockturtlesolutions.snifflib.invprobs.MetropolisHastings
-
- offersObjectSamplingFor(String) - Method in interface com.mockturtlesolutions.snifflib.invprobs.ObjectSamplerClient
-
- offersObjectSamplingFor(String) - Method in class com.mockturtlesolutions.snifflib.invprobs.StatisticalModel
-
Returns true if this model offers object sampling for the given string.
- Offset - Variable in class com.mockturtlesolutions.snifflib.datatypes.Counter
-
- offsetX - Variable in class com.mockturtlesolutions.snifflib.graphics.AbstractIconEntity
-
- offsetY - Variable in class com.mockturtlesolutions.snifflib.graphics.AbstractIconEntity
-
- ohFreddledGruntbuggly() - Static method in class com.mockturtlesolutions.snifflib.semantics.FillerText
-
Famous nonsense filler text from "Hitchikers Guide to the Galaxy" by Douglas Adams.
- okButton - Variable in class com.mockturtlesolutions.snifflib.datatypes.DataSetAdapterEditor
-
- okButton - Variable in class com.mockturtlesolutions.snifflib.datatypes.DataSetEditor
-
- okButton - Variable in class com.mockturtlesolutions.snifflib.graphics.DataSetSelectorFrame
-
- okButton - Variable in class com.mockturtlesolutions.snifflib.graphics.ModelSelector
-
- okButton - Variable in class com.mockturtlesolutions.snifflib.invprobs.AbstractCalibrationDialog
-
- okButton - Variable in class com.mockturtlesolutions.snifflib.invprobs.HierarchicalEditor
-
- okButton - Variable in class com.mockturtlesolutions.snifflib.invprobs.MCMCDialog
-
- okcancelListeners - Variable in class com.mockturtlesolutions.snifflib.datatypes.DataSetAdapterEditor
-
- okcancelListeners - Variable in class com.mockturtlesolutions.snifflib.datatypes.DataSetEditor
-
- okcancelListeners - Variable in class com.mockturtlesolutions.snifflib.graphics.DataSetSelectorFrame
-
- okcancelListeners - Variable in class com.mockturtlesolutions.snifflib.graphics.ModelSelector
-
- okcancelListeners - Variable in class com.mockturtlesolutions.snifflib.invprobs.AbstractCalibrationDialog
-
- okcancelListeners - Variable in class com.mockturtlesolutions.snifflib.invprobs.MCMCDialog
-
- okListeners - Variable in class com.mockturtlesolutions.snifflib.invprobs.HierarchicalEditor
-
- okListeners - Variable in class com.mockturtlesolutions.snifflib.reposconfig.graphical.RepositoryFindNameDialog
-
- oldload(File, int) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
Loads the whitespace-delimited text file as a DblMatrix ignoring the first N lines.
- oldParams - Variable in class com.mockturtlesolutions.snifflib.invprobs.AbstractProposalDistribution
-
- ONE - Static variable in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
- OneNorm(DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.linalg.VectorNorm
-
One vector norm
- OneVectorNormAlgorithm - Class in com.mockturtlesolutions.snifflib.linalg
-
- OneVectorNormAlgorithm() - Constructor for class com.mockturtlesolutions.snifflib.linalg.OneVectorNormAlgorithm
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.datatypes.database.DblMatrixNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.datatypes.database.MatrixStorageNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.flatfiletools.database.FlatFileNameSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.flatfiletools.database.FlatFileNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.flatfiletools.database.FlatFileSetNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.groovytools.database.GroovyScriptNamePostgreSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.groovytools.database.GroovyScriptNameSQLiteQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.groovytools.database.GroovyScriptNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.GaussianProposalNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.MCMCNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.MCMCRunNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.MCMCTraceNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.ProposalDistributionNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.mcmctools.database.WedgeNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryStorageXMLNameQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.semantics.database.WordStorageNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.spreadsheets.database.MyrtleNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.spreadsheets.database.ReservedFunctionNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalSetNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableNamePostgreSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableNameSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.CanonicalVariableNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.GLMStorageNamePostgreSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.GLMStorageNameSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.GLMStorageNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetNamePostgreSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetNameSQLiteQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetNameSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.ParameterSetNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.StatisticalModelNamePostgreSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.StatisticalModelNameSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.statmodeltools.database.StatisticalModelNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.timertools.database.TimerListenerNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.timertools.database.TimerNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.util.database.GridElementNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.vistools.database.ImageFileNameSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.vistools.database.ImageFileNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.vistools.database.ImageStackNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.xppauttools.database.XppBettyNameXMLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.xppauttools.database.XppOdeNamePostgreSQLQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.xppauttools.database.XppOdeNameSQLiteQuery
-
- onlyStorageName() - Method in class com.mockturtlesolutions.snifflib.xppauttools.database.XppOdeNameXMLQuery
-
- op_arg_count(char) - Method in class com.mockturtlesolutions.snifflib.spreadsheets.DefaultSpreadsheetFunction
-
- op_left_assoc(char) - Method in class com.mockturtlesolutions.snifflib.spreadsheets.DefaultSpreadsheetFunction
-
- op_preced(char) - Method in class com.mockturtlesolutions.snifflib.spreadsheets.DefaultSpreadsheetFunction
-
- openConnection() - Method in class com.mockturtlesolutions.snifflib.reposconfig.database.RepositoryPostgreSQLConnection
-
- openConnection() - Method in class com.mockturtlesolutions.snifflib.reposconfig.database.RepositorySQLConnection
-
- openConnection() - Method in class com.mockturtlesolutions.snifflib.reposconfig.database.RepositorySQLiteConnection
-
- OPENED_NEW - Static variable in class com.mockturtlesolutions.snifflib.spreadsheets.SpreadsheetPanelEvent
-
- openProject() - Method in class com.mockturtlesolutions.snifflib.spreadsheets.DefaultSpreadsheetPanel
-
- optDivideBy(DblMatrix, boolean) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
Divide one matrix by another.
- optDivideBy(int, boolean) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
Divide one matrix by another.
- optDivideBy(double, boolean) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
Divide one matrix by another.
- optDivideBy(Double, boolean) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
Divide one matrix by another.
- Optimizable - Interface in com.mockturtlesolutions.snifflib.invprobs
-
- OptimizableScalar - Interface in com.mockturtlesolutions.snifflib.invprobs
-
- Optimization - Interface in com.mockturtlesolutions.snifflib.invprobs
-
- OptimizationEvent - Class in com.mockturtlesolutions.snifflib.invprobs
-
- OptimizationEvent(int, Optimization) - Constructor for class com.mockturtlesolutions.snifflib.invprobs.OptimizationEvent
-
- OptimizationEvent(int, Optimization, int, int) - Constructor for class com.mockturtlesolutions.snifflib.invprobs.OptimizationEvent
-
- OptimizationListener - Interface in com.mockturtlesolutions.snifflib.invprobs
-
Listener intended for optimization events.
- optimize(Lpreg) - Method in class com.mockturtlesolutions.snifflib.invprobs.GCVSmoothMethod
-
- options - Variable in class com.mockturtlesolutions.snifflib.integration.AbstractOdeSolver
-
- Options - Variable in class com.mockturtlesolutions.snifflib.invprobs.DiffEvol
-
- Options - Variable in class com.mockturtlesolutions.snifflib.invprobs.NMSimplex
-
- or(DblMatrix, DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
"Or" one matrix with another.
- or(int, DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
"Or" one matrix with another.
- or(double, DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
"Or" one matrix with another.
- or(DblMatrix, int) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
"Or" one matrix with another.
- or(DblMatrix) - Method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
"Or" one matrix with another.
- or(DblMatrix, double) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
"Or" one matrix with another.
- ORANGE - Static variable in class com.mockturtlesolutions.snifflib.graphics.DefaultLineStyle
-
- OrdElement - Class in com.mockturtlesolutions.snifflib.datatypes
-
Object which is sampled by the OrdSetSampler class.
- OrdElement(Object, double) - Constructor for class com.mockturtlesolutions.snifflib.datatypes.OrdElement
-
Each sample element is some data stored in Element and a random key in SortKey.
- OrdElement(Object, double, Comparator) - Constructor for class com.mockturtlesolutions.snifflib.datatypes.OrdElement
-
Each sample element is some data stored in Element and a random key in SortKey.
- Order - Variable in class com.mockturtlesolutions.snifflib.invprobs.Interp1D
-
- OrdSetSampler - Class in com.mockturtlesolutions.snifflib.datatypes
-
This is a compound class useful for sampling from **and** maintaining an ordered set.
- OrdSetSampler() - Constructor for class com.mockturtlesolutions.snifflib.datatypes.OrdSetSampler
-
Create an ordered set sampler where objects order is their "natural order".
- OrdSetSampler(Comparator) - Constructor for class com.mockturtlesolutions.snifflib.datatypes.OrdSetSampler
-
Create an ordered set sampler where objects order is given by the given Comparator.
- OrdSetSampler.SampleComparator - Class in com.mockturtlesolutions.snifflib.datatypes
-
An internal comparator class used for comparing sample points based on their random SortKey.
- OrdSetSampler.SampleComparator() - Constructor for class com.mockturtlesolutions.snifflib.datatypes.OrdSetSampler.SampleComparator
-
- ORIENT_LEFT - Static variable in class com.mockturtlesolutions.snifflib.graphics.SLAnnotation
-
- ORIENT_RIGHT - Static variable in class com.mockturtlesolutions.snifflib.graphics.SLAnnotation
-
- origin - Variable in class com.mockturtlesolutions.snifflib.util.BarElement
-
- orth(DblMatrix) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
Return a vector orthogonal to the given vector.
- orth(DblMatrix[]) - Static method in class com.mockturtlesolutions.snifflib.datatypes.DblMatrix
-
Return a vector orthogonal to the spanning set of vectors.
- ORTHO_PERSPECTIVE - Static variable in class com.mockturtlesolutions.snifflib.graphics.SLCamera
-
- overlayOff() - Method in class com.mockturtlesolutions.snifflib.graphics.SnifflibGraphics
-
- overlayOn() - Method in class com.mockturtlesolutions.snifflib.graphics.SnifflibGraphics
-