Uses of Class
com.mockturtlesolutions.snifflib.datatypes.DblParamSet

Packages that use DblParamSet

Package	Description
com.mockturtlesolutions.snifflib.datatypes	Contains standard classes and interfaces for storage, retrieval, and display.
com.mockturtlesolutions.snifflib.graphics	Contains standard classes and interfaces for 2D and 3D graphics.
com.mockturtlesolutions.snifflib.integration	Contains standard classes and interfaces for performing integration.
com.mockturtlesolutions.snifflib.invprobs	Contains standard classes and interfaces for solving statistical inverse problems.
com.mockturtlesolutions.snifflib.mcmctools.database	Base classes for the repository storage framework of the mcmctools package.
com.mockturtlesolutions.snifflib.mcmctools.workbench	Graphical interface classes for the repository storage framework of the mcmctools package.
com.mockturtlesolutions.snifflib.pde	Contains standard classes and interfaces for numerical solution of partial differential equations.
com.mockturtlesolutions.snifflib.statmodeltools.database	Base classes for the repository storage framework of the statmodeltools package.
com.mockturtlesolutions.snifflib.statmodeltools.workbench	Graphical interface classes for the repository storage framework of the statmodeltools package.
com.mockturtlesolutions.snifflib.stats	Contains standard classes and interfaces for statistical storage classes and algorithms.
com.mockturtlesolutions.snifflib.testfun	Contains some typical functions useful for testing various algorithms.
com.mockturtlesolutions.snifflib.util	Contains some utility classes providing methods of broad applicability.
com.mockturtlesolutions.snifflib.xppauttools.database	Base classes for the repository storage framework of xppauttools

Uses of DblParamSet in com.mockturtlesolutions.snifflib.datatypes

Methods in com.mockturtlesolutions.snifflib.datatypes that return DblParamSet

Modifier and Type	Method and Description
static DblParamSet	DblParamSet.abs(DblParamSet X) Take absolute value of parameter guesses.
DblParamSet	DblParamSet.copy() Makes a deep copy of the parameter set.
DblParamSet	DblParamSet.divideBy(DblMatrix X) Divide parameter set by scalar.
DblParamSet	DblParamSet.divideBy(DblParamSet X) Divide one parameter set by another parameter set.
DblParamSet	DblParamSet.divideBy(double X) Divide parameter set by scalar.
DblParamSet	DblParamSet.divideBy(int X) Divide parameter set by scalar.
DblParamSet	DblParamSet.minus(DblMatrix X) Subtract scalar from parameter set.
DblParamSet	DblParamSet.minus(DblParamSet X) Subtract two parameter sets.
DblParamSet	DblParamSet.minus(double X) Subtract scalar from parameter set.
DblParamSet	DblParamSet.minus(int X) Subtract scalar from parameter set.
DblParamSet	DblParamSet.plus(DblMatrix X) Add scalar to a parameter set.
DblParamSet	DblParamSet.plus(DblParamSet X) Add two parameter sets.
DblParamSet	DblParamSet.plus(double X) Add scalar to a parameter set.
DblParamSet	DblParamSet.plus(int X) Add scalar to a parameter set.
DblParamSet	DblParamSet.times(DblMatrix X) Multiply parameter sets by scalar.
DblParamSet	DblParamSet.times(DblParamSet X) Multiply two parameter sets.
DblParamSet	DblParamSet.times(double X) Multiply parameter sets by scalar.
DblParamSet	DblParamSet.times(int X) Multiply parameter sets by scalar.

Methods in com.mockturtlesolutions.snifflib.datatypes with parameters of type DblParamSet

Modifier and Type	Method and Description
static DblParamSet	DblParamSet.abs(DblParamSet X) Take absolute value of parameter guesses.
DblParamSet	DblParamSet.divideBy(DblParamSet X) Divide one parameter set by another parameter set.
DblParamSet	DblParamSet.minus(DblParamSet X) Subtract two parameter sets.
DblParamSet	DblParamSet.plus(DblParamSet X) Add two parameter sets.
void	DblParamSet.refactorAgainst(DblParamSet P) Adds the given parameters only if they are not currently declared.
void	DblParamSet.replaceParams(DblParamSet P) Sets the given parameters.
DblParamSet	DblParamSet.times(DblParamSet X) Multiply two parameter sets.

Uses of DblParamSet in com.mockturtlesolutions.snifflib.graphics

Fields in com.mockturtlesolutions.snifflib.graphics declared as DblParamSet

Modifier and Type	Field and Description
protected DblParamSet	DefaultReportInstance.params

Methods in com.mockturtlesolutions.snifflib.graphics that return DblParamSet

Modifier and Type	Method and Description
DblParamSet	DefaultReportInstance.getParams()

Methods in com.mockturtlesolutions.snifflib.graphics with parameters of type DblParamSet

Modifier and Type	Method and Description
void	LpregPanel.ResultsTab.InvOptObjective.replaceParams(DblParamSet X)
void	FitFrameModel.replaceParams(DblParamSet X)
void	DefaultReportInstance.setParams(DblParamSet S)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.integration

Fields in com.mockturtlesolutions.snifflib.integration declared as DblParamSet

Modifier and Type	Field and Description
protected DblParamSet	BasicODE.Param
protected DblParamSet	Ode.Param

Methods in com.mockturtlesolutions.snifflib.integration with parameters of type DblParamSet

Modifier and Type	Method and Description
void	BasicODE.replaceParams(DblParamSet X)
void	Ode.replaceParams(DblParamSet X)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.invprobs

Fields in com.mockturtlesolutions.snifflib.invprobs declared as DblParamSet

Modifier and Type	Field and Description
protected DblParamSet	AbstractSimplexObjective.guess
protected DblParamSet	VisualScalarOptimizer.InitialGuess
protected DblParamSet	AbstractProposalDistribution.mixingParameter
protected DblParamSet	AbstractProposalDistribution.newParams
protected DblParamSet	AbstractProposalDistribution.oldParams
DblParamSet	MyQuadratic.Param
protected DblParamSet	StatisticalModel.Params
DblParamSet	ParameterValuePair.ParamSet
protected DblParamSet	StatisticalModel.PosteriorParams
protected DblParamSet	StatisticalModel.PriorParams
protected DblParamSet	DblParamSetSimplex.SumOfParameters

Methods in com.mockturtlesolutions.snifflib.invprobs that return DblParamSet

Modifier and Type	Method and Description
DblParamSet	DiffEvol.getBestEstimate() Get the estimated parameter value at the estimated parameter value.
abstract DblParamSet	VisualScalarOptimizer.getBestEstimate() Get the estimated parameter value at the estimated parameter value.
DblParamSet	NMSimplex.getBestEstimate() Get the estimated parameter value at the estimated parameter value.
DblParamSet	DistributedStatisticalModel.getDistributedParams()
DblParamSet	MCMC.getEstimate() Returns the average of each parameter taken over the chain.
DblParamSet	MCMC.getEstimate(int N) Returns the average of each parameter taken over the last N elements of the chain.
DblParamSet	DblParamSetSimplex.getFreshNMMean() Calculate average of parameter values **ignoring the worst parameter set**.
DblParamSet	MCMC.getInitialGuess()
DblParamSet[]	DiffEvol.getInitPop() Output an array of DblParamSet having an initial guess in each element of the array.
DblParamSet	ProposalDistribution.getMixingParams()
DblParamSet	AbstractProposalDistribution.getMixingParams()
DblParamSet	MetropolisHastings.getNewParams()
DblParamSet	MCMCSampler.getNewParams()
DblParamSet	DblParamSetSimplex.getNMMean() Calculate average of parameter values **ignoring the worst parameter set**.
DblParamSet	StatisticalModel.getParams()
DblParamSet	DistributedStatisticalModel.getParams()
DblParamSet	KernelDensityEstimator.ConfidenceRegionObjective.getParams()
DblParamSet	DblParamSetFrame.getParamSet()
DblParamSet	DblParamSetEditor.getParamSet()
DblParamSet	StatisticalModel.getPosteriorParams() Get special (options) parameters needed to evaluate the posterior.
DblParamSet	MetropolisHastings.getPreviousParams()
DblParamSet	MCMCSampler.getPreviousParams()
DblParamSet	StatisticalModel.getPriorParams()
DblParamSet	MCMC.getVariance() Returns the variance of each parameter taken over the chain.
DblParamSet	ProposalDistribution.negLogLikeNewGivenOld()
DblParamSet	AbstractProposalDistribution.negLogLikeNewGivenOld()
DblParamSet	ProposalDistribution.negLogLikeOldGivenNew()
DblParamSet	AbstractProposalDistribution.negLogLikeOldGivenNew()
DblParamSet	StatisticalModel.negLogPrior() Returns the negative log of the prior probability of the current parameter set.
abstract DblParamSet	AbstractProposalDistribution.negLogPrior()
DblParamSet	GaussianProposal.negLogPrior()
DblParamSet	ProposalDistribution.sample()
DblParamSet	AbstractProposalDistribution.sample()
DblParamSet	ProposalDistribution.sample(java.lang.String[] subset)
DblParamSet	AbstractProposalDistribution.sample(java.lang.String[] subset)
DblParamSet	MetropolisHastings.sample(java.lang.String[] subset)
DblParamSet	MCMCSampler.sample(java.lang.String[] subset)
DblParamSet	StatisticalModel.samplePosterior() Returns a sample from the posterior distribution of the parameters.
DblParamSet	AbstractProposalDistribution.samplePosterior()
DblParamSet	StatisticalModel.samplePosterior(java.lang.String[] subset) Returns a sample from the posterior distribution of the given subset of parameters.
abstract DblParamSet	AbstractProposalDistribution.samplePosterior(java.lang.String[] subset)
DblParamSet	GaussianProposal.samplePosterior(java.lang.String[] subset) Samples parameters from a Gaussian distribution centered about the current old values.

Methods in com.mockturtlesolutions.snifflib.invprobs with parameters of type DblParamSet

Modifier and Type	Method and Description
DblMatrix	NMSimplex.getFitnessValue(DblParamSet param) Get the fitness value for a particular parameter set.
DblMatrix	StatisticalModel.getValueAt(DblParamSet P)
void	DistributedStatisticalModel.replaceDistributedParams(DblParamSet X)
void	ProposalDistribution.replaceMixingParams(DblParamSet M)
void	AbstractProposalDistribution.replaceMixingParams(DblParamSet M)
void	MyQuadratic.replaceParam(DblParamSet NewParam) Replace the parameter values in the existing set ones in another DblParamSet.
void	StatisticalModel.replaceParams(DblParamSet X) Replace parameters with those in X.
void	DistributedStatisticalModel.replaceParams(DblParamSet X)
void	KernelDensityEstimator.ConfidenceRegionObjective.replaceParams(DblParamSet X)
void	MyQuadratic.replaceParams(DblParamSet X)
void	NamedParameters.replaceParams(DblParamSet X)
void	AbstractSimplexObjective.replaceParams(DblParamSet X)
void	StatisticalModel.replacePosteriorParams(DblParamSet P) Replace special (options) parameters needed to evaluate the posterior.
void	StatisticalModel.replacePriorParams(DblParamSet P)
void	MCMC.setInitialGuess(DblParamSet guess)
void	ProposalDistribution.setMixingParams(DblParamSet M)
void	AbstractProposalDistribution.setMixingParams(DblParamSet M)
void	MetropolisHastings.setNewParams(DblParamSet x) Sets the pervious parameter to the current parameters then sets the current parameters to the input parameters.
void	MCMCSampler.setNewParams(DblParamSet s)
void	StatisticalModel.setParams(DblParamSet P)
void	DblParamSetFrame.setParamSet(DblParamSet p)
void	DblParamSetEditor.setParamSet(DblParamSet p)
void	StatisticalModel.setPosteriorParams(DblParamSet P) Set special (options) parameters needed to evaluate the posterior.
void	MetropolisHastings.setPreviousParams(DblParamSet x)
void	MCMCSampler.setPreviousParams(DblParamSet s)
void	StatisticalModel.setPriorParams(DblParamSet P)
void	ProposalDistribution.updateNewParams(DblParamSet params)
void	AbstractProposalDistribution.updateNewParams(DblParamSet params)
void	ProposalDistribution.updateOldParams(DblParamSet params)
void	AbstractProposalDistribution.updateOldParams(DblParamSet params)

Constructors in com.mockturtlesolutions.snifflib.invprobs with parameters of type DblParamSet

Constructor and Description
DiffEvol(OptimizableScalar Model, DblParamSet InitGuess) Construct a new Differential Evolution Genetic Algorithm solver using a model and an intial parameter guess.
NMSimplex(OptimizableScalar Model, DblParamSet InitGuess) Construct a new Nelder-Mead Simplex using an model and an intial parameter guess.
NMSimplexConfiguration(DblParamSet Params)
ParameterValuePair(DblParamSet P, DblMatrix X)
VisualScalarOptimizer(OptimizableScalar Model, DblParamSet InitGuess) Construct an optimizer using a model and an initial guess.

Uses of DblParamSet in com.mockturtlesolutions.snifflib.mcmctools.database

Methods in com.mockturtlesolutions.snifflib.mcmctools.database with parameters of type DblParamSet

Modifier and Type	Method and Description
void	MCMCRunPostgreSQL.restartUsingParametersFrom(DblParamSet params) Restarts the chain with a new candidate parameter set copied from the values in the given DblParamSet.
void	MCMCRunDOM.restartUsingParametersFrom(DblParamSet params) Restarts the chain with a new candidate parameter set copied from the values in the given DblParamSet.
void	MCMCRunSQL.restartUsingParametersFrom(DblParamSet params) Restarts the chain with a new candidate parameter set copied from the values in the given DblParamSet.
void	MCMCRunTransferAgent.restartUsingParametersFrom(DblParamSet params) Restarts the chain with a new candidate parameter set copied from the values in the given DblParamSet.
void	MCMCRunXML.restartUsingParametersFrom(DblParamSet params) Restarts the chain with a new candidate parameter set copied from the values in the given DblParamSet.
void	MCMCRunStorage.restartUsingParametersFrom(DblParamSet params)
void	MCMCRunPostgreSQL.setReferenceParametersFrom(DblParamSet P)
void	MCMCRunDOM.setReferenceParametersFrom(DblParamSet P)
void	MCMCRunSQL.setReferenceParametersFrom(DblParamSet P)
void	MCMCRunXML.setReferenceParametersFrom(DblParamSet P)
void	MCMCRunStorage.setReferenceParametersFrom(DblParamSet P)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.mcmctools.workbench

Methods in com.mockturtlesolutions.snifflib.mcmctools.workbench with parameters of type DblParamSet

Modifier and Type	Method and Description
void	MCMCRunPanel.restartUsingParametersFrom(DblParamSet params) Restarts the chain with a new candidate parameter set copied from the values in the given DblParamSet.
void	MCMCRunFrame.restartUsingParametersFrom(DblParamSet par) Restarts the chain with a new candidate parameter set copied from the values in the given DblParamSet.
void	MCMCRunPanel.setReferenceParametersFrom(DblParamSet P)
void	MCMCRunFrame.setReferenceParametersFrom(DblParamSet P)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.pde

Fields in com.mockturtlesolutions.snifflib.pde declared as DblParamSet

Modifier and Type	Field and Description
protected DblParamSet	AbstractBoundaryValueProblem.params
protected DblParamSet	AbstractDiffuse.Params

Methods in com.mockturtlesolutions.snifflib.pde with parameters of type DblParamSet

Modifier and Type	Method and Description
void	AbstractDiffuse.replaceParams(DblParamSet X)
void	BVP.replaceParams(DblParamSet X)
void	Diffuse.replaceParams(DblParamSet X)
void	StrangSplitter.replaceParams(DblParamSet P)
void	AbstractBoundaryValueProblem.replaceParams(DblParamSet X)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.statmodeltools.database

Methods in com.mockturtlesolutions.snifflib.statmodeltools.database that return DblParamSet

Modifier and Type	Method and Description
DblParamSet	ParameterSetDOM.getDblParamSet()
DblParamSet	ParameterSetSQLite.getDblParamSet()
DblParamSet	ParameterSetPostgreSQL.getDblParamSet()
DblParamSet	ParameterSetSQL.getDblParamSet()
DblParamSet	CanonicalVariableDOM.getDblParamSet()
DblParamSet	ParameterSetXML.getDblParamSet()
DblParamSet	ParameterSetStorage.getDblParamSet()
DblParamSet	CanonicalVariablePostgreSQL.getDblParamSet()
DblParamSet	GLMStorageXML.getParameterSet()
DblParamSet	GLMStorageSQL.getParameterSet()
DblParamSet	GLMStorageDOM.getParameterSet()
DblParamSet	BackedByNamedParameters.getParameterSet()
DblParamSet	GLMStoragePostgreSQL.getParameterSet()

Methods in com.mockturtlesolutions.snifflib.statmodeltools.database with parameters of type DblParamSet

Modifier and Type	Method and Description
void	ParameterSetDOM.setUsingDblParamSet(DblParamSet X)
void	ParameterSetSQLite.setUsingDblParamSet(DblParamSet X)
void	ParameterSetPostgreSQL.setUsingDblParamSet(DblParamSet X)
void	ParameterSetSQL.setUsingDblParamSet(DblParamSet X)
void	CanonicalVariableDOM.setUsingDblParamSet(DblParamSet X)
void	ParameterSetXML.setUsingDblParamSet(DblParamSet X)
void	ParameterSetStorage.setUsingDblParamSet(DblParamSet X)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.statmodeltools.workbench

Methods in com.mockturtlesolutions.snifflib.statmodeltools.workbench that return DblParamSet

Modifier and Type	Method and Description
DblParamSet	ParameterSetFrame.getDblParamSet()
DblParamSet	ParameterSetPanel.getDblParamSet()
DblParamSet	GLMStorageFrame.getParameterSet()

Methods in com.mockturtlesolutions.snifflib.statmodeltools.workbench with parameters of type DblParamSet

Modifier and Type	Method and Description
void	ParameterSetFrame.setUsingDblParamSet(DblParamSet s)
void	ParameterSetPanel.setUsingDblParamSet(DblParamSet X)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.stats

Methods in com.mockturtlesolutions.snifflib.stats that return DblParamSet

Modifier and Type	Method and Description
DblParamSet	ProbabilityDensity.getParams()

Methods in com.mockturtlesolutions.snifflib.stats with parameters of type DblParamSet

Modifier and Type	Method and Description
void	ProbabilityDensity.replaceParams(DblParamSet X) Replace parameters with those in X.

Uses of DblParamSet in com.mockturtlesolutions.snifflib.testfun

Methods in com.mockturtlesolutions.snifflib.testfun with parameters of type DblParamSet

Modifier and Type	Method and Description
void	Constant.replaceParams(DblParamSet X)
void	HollingI.replaceParams(DblParamSet X)
void	Quadratic.replaceParams(DblParamSet X)
void	Cubic.replaceParams(DblParamSet X)
void	HollingIII.replaceParams(DblParamSet X)
void	HollingII.replaceParams(DblParamSet X)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.util

Methods in com.mockturtlesolutions.snifflib.util with parameters of type DblParamSet

Modifier and Type	Method and Description
void	Erf.replaceParams(DblParamSet X)

Uses of DblParamSet in com.mockturtlesolutions.snifflib.xppauttools.database

Methods in com.mockturtlesolutions.snifflib.xppauttools.database that return DblParamSet

Modifier and Type	Method and Description
DblParamSet	XppOdeXML.getXppInitialConditionSet()
DblParamSet	XppOdePostgreSQL.getXppInitialConditionSet()
DblParamSet	XppOdeSQLite.getXppInitialConditionSet()
DblParamSet	XppOdeStorage.getXppInitialConditionSet()
DblParamSet	XppOdeDOM.getXppInitialConditionSet()
DblParamSet	XppOdeXML.getXppParameterSet()
DblParamSet	XppOdePostgreSQL.getXppParameterSet()
DblParamSet	XppOdeSQLite.getXppParameterSet()
DblParamSet	XppOdeStorage.getXppParameterSet()
DblParamSet	XppOdeDOM.getXppParameterSet()

Methods in com.mockturtlesolutions.snifflib.xppauttools.database with parameters of type DblParamSet

Modifier and Type	Method and Description
void	XppOdeXML.setXppParamsFrom(DblParamSet var) Set parameters in this XppOdeStorage to the values of any corresponding parameter in the DblParamSet.
void	XppOdePostgreSQL.setXppParamsFrom(DblParamSet var) Set parameters in this XppOdeStorage to the values of any corresponding parameter in the DblParamSet.
void	XppOdeTransferAgent.setXppParamsFrom(DblParamSet var) Set parameters in this XppOdeStorage to the values of any corresponding parameter in the DblParamSet.
void	XppOdeSQLite.setXppParamsFrom(DblParamSet var) Set parameters in this XppOdeStorage to the values of any corresponding parameter in the DblParamSet.
void	XppOdeStorage.setXppParamsFrom(DblParamSet var)
void	XppOdeDOM.setXppParamsFrom(DblParamSet var) Set parameters in this XppOdeStorage to the values of any corresponding parameter in the DblParamSet.